View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10263_low_4 (Length: 436)
Name: NF10263_low_4
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10263_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 44694077 - 44693658
Alignment:
| Q |
18 |
aactataccaggaatcccactttgtaataaacacaaagtatccattgtttttaaagattatatgaatatggttatggaatctttgaactaaacagatagt |
117 |
Q |
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| T |
44694077 |
aactataccaggaatcccactttgtaataaacacaaagtaaccattgtttttaaagattgtatgaatatggttatggaatctttgaactaaacagatagt |
44693978 |
T |
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| Q |
118 |
taaattgatataa-------------------tctcagggtggtggtggtgatgctgatagcgtaagtagtttcaatttcgaattctgaaagaaatttta |
198 |
Q |
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| T |
44693977 |
taaattgatataacgattatgttctgtgataatctcagggtggtggtg---atgctgatagcgtaagtagtttcaatttcgaattctgaaagaaatttta |
44693881 |
T |
|
| Q |
199 |
cttttctggggaagaaatgttttaaaatacttaagtgattattgcacgtgcttgttagtgcaaatctctcgtttcgttttcaaggtttcgtaggaaagca |
298 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693880 |
cttttctggggaagaaatgttttaaaata----agtgattattgcacgtgcttgttagtgcaaatctctcgtttcgttttcaaggtttcgtaggaaagca |
44693785 |
T |
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| Q |
299 |
cgtgatttcaaggaagtgccacgtgcagcaactgcatggctgaaattagtgacgtgtacgtgaaacacaaaaccagcgtgtgtttctcgtttgtattcct |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693784 |
cgtgatttcaaggaagtgccacgtgcagcaactgcatggctgaaattagtgacgtgtacgtgaaacacaaaaccagcgtgtgtttctcgtttgtattcct |
44693685 |
T |
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| Q |
399 |
atcattttgggaaattgtccctttcat |
425 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44693684 |
atcattttgggaaattgtccctttcat |
44693658 |
T |
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