View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10263_low_5 (Length: 356)
Name: NF10263_low_5
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10263_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 48644839 - 48645166
Alignment:
| Q |
20 |
cagtacgtgttagaaatggtggtggaagtggtggtggtttagttgtgcctgcaaatattggttctgccacggtggcaacagcagtaacccattagaggta |
119 |
Q |
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| T |
48644839 |
cagtgcgtgttagaaatggtggtggaagtggtggtggtttagttgtgcctgcaaatattggttctgccacggtggcaacagcagtaacccattagaggta |
48644938 |
T |
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| Q |
120 |
gggtcgagccagcaagagaagaatcaaaaatattatatagatcaaaccacaccactgacattacaatatttgacatttcacatatannnnnnnnnnnnnn |
219 |
Q |
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| T |
48644939 |
gggtcgagccagcaagagaagaatcaaaaatattatatagatcaaaccacaccactgacattacaatatttgacatttcacatatatttttttatttttt |
48645038 |
T |
|
| Q |
220 |
nnnnncaccccactccccttcgttagagtcatgtcattttagtaaaggcttacttgtatacttactagcagttgctatacatatatataatgtcttgttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645039 |
gttttcaccccactccccttcgttagagtcatgtcattttagtaaaggcttacttgtatacttactagcagttgctatacatatatataatgtcttgttt |
48645138 |
T |
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| Q |
320 |
gattaaaactattggacagttttcatct |
347 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48645139 |
gattaaaactattggacagttttcatct |
48645166 |
T |
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