View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10263_low_6 (Length: 333)
Name: NF10263_low_6
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10263_low_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 1455878 - 1455557
Alignment:
| Q |
12 |
agagatgaggttcctaagatccataaagcaagcagcaaacaaatatgttacgcaagtggaggacttgttatggtcacatgatgatgaagaaaaggaagag |
111 |
Q |
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| T |
1455878 |
agagatgaggttcctaagatccataaagcaagcagcaaacaaatatgttacgcaagtggaggacttgttatggtcacatgatgatgaagaaaaggaagag |
1455779 |
T |
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| Q |
112 |
aactcagaaatttccctctcagatgatgtgtgggtgatttgcccattcaatgattgttcaattttgatgagttttgatgggcttgaaatcgtgacaaaag |
211 |
Q |
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| T |
1455778 |
aactcagaaatttccctctcagatgatgtgtgggtgatttgtccattcaatgattgttcaattttgatgagttttgatgggcttgaaatcgtgacaaaag |
1455679 |
T |
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| Q |
212 |
ccgagtgcccgtcatgtcacaggttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacgaaaactagcatgctc |
311 |
Q |
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| T |
1455678 |
ccgagtgcccgtcatgtcacatgttattttgcgtacaatgtaaagttccatggcatgaaggactcaactgtcaacaatttcaacgaaaactagcatgttc |
1455579 |
T |
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| Q |
312 |
caataaaacatacatgattgtt |
333 |
Q |
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| T |
1455578 |
caataaaacatacatgattgtt |
1455557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 33532361 - 33532321
Alignment:
| Q |
226 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
266 |
Q |
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| T |
33532361 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
33532321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 16868986 - 16869026
Alignment:
| Q |
226 |
tgtcacaggttattttgcgtacaatgtaaagttccatggca |
266 |
Q |
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| T |
16868986 |
tgtcataggttattttgtgtgcaatgtaaagttccatggca |
16869026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 19314957 - 19314989
Alignment:
| Q |
246 |
acaatgtaaagttccatggcatgaaggactcaa |
278 |
Q |
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| T |
19314957 |
acaatgtaaagttccatggcatgaaggattcaa |
19314989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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