View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10263_low_7 (Length: 309)
Name: NF10263_low_7
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10263_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 26613338 - 26613633
Alignment:
| Q |
1 |
gaaaactttgaagacaagagatgagaatgataatgccaagagta---gtacacttcttgatgcatgcataaactagctatagcaagaagaatatcaagaa |
97 |
Q |
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| T |
26613338 |
gaaaactttgaagacaagagatgagaatgataatgccaagagtactagtacacttcttgatgcatgcataaactagctatagcaagaagaatatcaagaa |
26613437 |
T |
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| Q |
98 |
ct--atagtagcaatggcttatccacattatcgatcacaatttggagacacaacattcactaaggtttttgttggaggactagcttgggaaactccaact |
195 |
Q |
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| T |
26613438 |
ctctatagtagcaatggcttatccacattatcgatcacaatttggagacacaacattcactaaggtttttgttggaggactagcttgggaaactccaact |
26613537 |
T |
|
| Q |
196 |
gatgaaatgagaacatattttgaacaatttggtgacatacttgaagctgtcattatcactgataagaacacaggaaaatctaaaggatacggattt |
291 |
Q |
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| T |
26613538 |
gatgaaatgagaacatattttgaacaatttggtgacatacttgaagctgtcattatcactgataagaacacaggaaaatctaaaggatacggattt |
26613633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 281
Target Start/End: Original strand, 9036484 - 9036623
Alignment:
| Q |
142 |
gacacaacattcactaaggtttttgttggaggactagcttgggaaactccaactgatgaaatgagaacatattttgaacaatttggtgacatacttgaag |
241 |
Q |
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||||||||||| || || | ||||||||||| ||||||||||||||| || || |||||||| ||||||||||||||||| || || | |||| |
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| T |
9036484 |
gacacaacatttaccaaattatttgttggagggttagcttgggaaactcaaagggaaacaatgagaatgtattttgaacaatttggagagatcttagaag |
9036583 |
T |
|
| Q |
242 |
ctgtcattatcactgataagaacacaggaaaatctaaagg |
281 |
Q |
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| T |
9036584 |
ctgttgttatcactgataagtatactggaagatctaaagg |
9036623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 12141532 - 12141590
Alignment:
| Q |
132 |
acaatttggagacacaacattcactaaggtttttgttggaggactagcttgggaaactc |
190 |
Q |
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||||||||| |||||||| | ||| || ||||||||||||||| | ||||||||||||| |
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| T |
12141532 |
acaatttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaactc |
12141590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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