View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10263_low_8 (Length: 276)
Name: NF10263_low_8
Description: NF10263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10263_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 40739877 - 40740137
Alignment:
| Q |
1 |
tgaaaacacttgatgaaatacacagtacaataacccctttatatagacttgggtatggttacttgactaccaagttaactctatgattaagttaatctct |
100 |
Q |
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| T |
40739877 |
tgaaaacacttgatgaaatacacagtacaataacccctttatatagacttgggtatggttacttgactaccaagttaactctatgattaagttaatctct |
40739976 |
T |
|
| Q |
101 |
aattaactcaatcttatcaaactaacttctaaccagtgtcatttggttagtaattgtgtaacctctaacaaacttgttataatctacggtatatagatca |
200 |
Q |
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| T |
40739977 |
aattaactcaatcttatcaaactaacttctaaccagtgtcagctggttagtaattgtctaaactctaacaaacttgtgataatctacagtatatagatca |
40740076 |
T |
|
| Q |
201 |
taacacggtagactagactaatgaaccaacacatcctatgcggtgatcctctagggttcct |
261 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
40740077 |
taacactgtagactagactaatgaaccaacacatcctatagggcgatcctctagggttcct |
40740137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 55212345 - 55212270
Alignment:
| Q |
55 |
atggttacttgactaccaagttaactctatgattaagttaatctctaattaactcaatcttatcaaactaacttcta |
131 |
Q |
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| T |
55212345 |
atggttacttgactaccaagtaaaccatatgatt-tgctaatctctaactaactcatccttatcaaaccaacttcta |
55212270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 38163170 - 38163116
Alignment:
| Q |
54 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaattaact |
108 |
Q |
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| T |
38163170 |
tatggttacttgactaccaagtaaaccctatgatcaagttaatttctaattaact |
38163116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 22311081 - 22311161
Alignment:
| Q |
54 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaat----taactcaatcttatcaaactaacttct |
130 |
Q |
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|||||||||| ||||| ||||| |||| |||||| |||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
22311081 |
tatggttactcgactatcaagtaaactttatgatcaagttaatatctaatcaactaactcaatcttattaaactaacttct |
22311161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 34015962 - 34015908
Alignment:
| Q |
54 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaattaact |
108 |
Q |
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||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |
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| T |
34015962 |
tatggttacttgactgacaagtaaactctatgatcaagttaatctctaaataact |
34015908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 43935836 - 43935917
Alignment:
| Q |
54 |
tatggttacttgactaccaagttaactctatgattaagttaatct----ctaattaactcaatcttatcaaactaacttcta |
131 |
Q |
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| T |
43935836 |
tatggttacttgactgtcaagtaaacgctatgattaagttaatctttaactatttatctcaatcttatccaactaacttcta |
43935917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 29661870 - 29661918
Alignment:
| Q |
54 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaa |
102 |
Q |
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|||||||| ||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
29661870 |
tatggttaattgactaacaagtaaactctatgatcaagttaatctctaa |
29661918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 23398069 - 23398124
Alignment:
| Q |
54 |
tatggttacttgactaccaagttaactctatgattaagttaatctctaattaactc |
109 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||| |||| | ||||||| |||||| |
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| T |
23398069 |
tatggttacttgactaacaagtaaactctatgatcaagtaagtctctaactaactc |
23398124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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