View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10264_high_1 (Length: 253)
Name: NF10264_high_1
Description: NF10264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10264_high_1 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 35046684 - 35046921
Alignment:
| Q |
16 |
atgaagactgtatcgtttgctttaatggagacgactttgagctgtgtgatcgcatgtgagaattgatactgactgctattaagagactctttaaacccta |
115 |
Q |
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| T |
35046684 |
atgaagactgtatcgtttgctttaatggagacgactttgagctgtgtgatcgcatgtgagaattgatactgactgctattaagagactctttaaacccta |
35046783 |
T |
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| Q |
116 |
atttacgttgcagaatataaactgtttttatggactgcaactattttgaaaattcattgttttttctttgtgttttataggggatgcactaacccttacc |
215 |
Q |
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| T |
35046784 |
atttacgttgcagaatataaactgtttttatggactgcaactattttgaaaattcattgttttttctttgtgttttataggggatgcactaatccttacc |
35046883 |
T |
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| Q |
216 |
acccatcatgtgttaaaacgggagaaagtcttggttca |
253 |
Q |
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| T |
35046884 |
acccatcatgtgttaaaacgggagaaagtcttggttca |
35046921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 34357446 - 34357367
Alignment:
| Q |
16 |
atgaagactgtatcgtttgctttaatggagacgactttgagctgtgtgatcgcatgtgagaattgatactgactgctatt |
95 |
Q |
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| T |
34357446 |
atgaagactgtatcgtttgctttgatggagacgactttgaactgtgcgatcgcatgtgagaattgatactgactgctatt |
34357367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 34356864 - 34356765
Alignment:
| Q |
155 |
actattttgaaaattcattgttttttc--tttgtgttttataggggatgcactaacccttaccacccatcatgtgttaaaacgggagaaagtcttggttc |
252 |
Q |
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| T |
34356864 |
actattttgaaaattcattgttttttctttttgtgtttttcaggggatgtcccaatccttaccacccatcatgtgtt-aaacgtgagaaagtcttggttc |
34356766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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