View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10264_low_1 (Length: 438)
Name: NF10264_low_1
Description: NF10264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10264_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 52565299 - 52564877
Alignment:
| Q |
18 |
ggtaaaacattgttggctagggctattgccagtaatatagatgctaacttcctaaaggtcagcttatgtatcttttacctattacatgtatcatgaaatg |
117 |
Q |
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| T |
52565299 |
ggtaaaacattgttggctagggctattgccagtaatatagatgctaacttcctaaaggtcagcttatgtatcttttacctattacatgtatcatgaaatg |
52565200 |
T |
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| Q |
118 |
tctttcactgtaaactgtatttacatttccttttctctaatataggttgtttcaagtgccataattgataagtacattggagaaagtgccaggttaatta |
217 |
Q |
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| T |
52565199 |
tctttcactgtaaactgtatttacatttccttttctctaatataggttgtttcaagtgccataattgataagtacattggagaaagtgccaggttaatta |
52565100 |
T |
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| Q |
218 |
gagagatgtttgggtatgcacgtgatcaccaggtgata--tttgtgttcagttgtcttcctataggtttatataatcaaattgaaagaagttctgaatct |
315 |
Q |
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| T |
52565099 |
gagagatgtttgggtatgcacgtgatcaccaggtgatatttttgtgttcagttgtcttcctataggtttatataatcaaattgaaagaagttctgaatct |
52565000 |
T |
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| Q |
316 |
ccactgttttcttagccatgcatcatttttatggacgagatcgatgccattggtggtcgccgtttcagtgaggggacaagtgcagatcgcgagattcaga |
415 |
Q |
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| T |
52564999 |
ccactgttttcttagccatgcatcatttttatggacgagatcgatgccattggtggtcgccgtttcagtgagggaacaagtgcagatcgtgagattcaga |
52564900 |
T |
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| Q |
416 |
gaacgttaatggagctgcttaat |
438 |
Q |
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| T |
52564899 |
gaacgttaatggagctgcttaat |
52564877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 437
Target Start/End: Complemental strand, 54843133 - 54843023
Alignment:
| Q |
327 |
ttagccatgcatcatttttatggacgagatcgatgccattggtggtcgccgtttcagtgaggggacaagtgcagatcgcgagattcagagaacgttaatg |
426 |
Q |
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| T |
54843133 |
ttagccttgcatcatattcatggatgagattgatgccattggtggacggcgtttcagtgagggcacaagtgctgatcgtgaaattcaaagaactctcatg |
54843034 |
T |
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| Q |
427 |
gagctgcttaa |
437 |
Q |
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| T |
54843033 |
gagcttcttaa |
54843023 |
T |
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