View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10264_low_4 (Length: 229)
Name: NF10264_low_4
Description: NF10264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10264_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 35047137 - 35046915
Alignment:
| Q |
7 |
caaattttatcatggtaattgagaatgtaaccattcaaaagagtttgagaagaactcatgatattgtgacttaatgtaagtcacatttataaccacaatt |
106 |
Q |
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| T |
35047137 |
caaattttatcatggtaattgagaatgtaaccattcaaaagaatttgagaagaactcatgatattgtgacttaatgtaagtcacatttataaccacaatt |
35047038 |
T |
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| Q |
107 |
taaaactaacaatgaaattctcattgaactgagtgcacacctttttcgatgaagaaaattgtagagagttggaataagaaaacttaccggtaccagaatt |
206 |
Q |
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| T |
35047037 |
taaaactaacaatgaaattctcattggactgagtgcacacctttttcgatgaagaaaattgtagagagttggaataagaaaacttaccggtaccagaatt |
35046938 |
T |
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| Q |
207 |
caagttttccttggcttgaacca |
229 |
Q |
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| T |
35046937 |
caagttttccttggcttgaacca |
35046915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 34356713 - 34356771
Alignment:
| Q |
171 |
agagttggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaacca |
229 |
Q |
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| T |
34356713 |
agagttggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaacca |
34356771 |
T |
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