View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_1 (Length: 798)
Name: NF10265_high_1
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 49 - 772
Target Start/End: Complemental strand, 28542797 - 28542075
Alignment:
| Q |
49 |
gaagataatatttttcagttttcaacttaacagcatccaaaagtataacatgtattttgtgtgcaaataaaaatgtattttgtttctatattattatgct |
148 |
Q |
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| T |
28542797 |
gaagataatatttttcagttttcaacttaacagcatccaaaagtataacatgtattttgtgtgcaaataaaaatgtattttgtttctacattattatgct |
28542698 |
T |
|
| Q |
149 |
tttctgtagtatatattttcctaaattcgttttctttatctttaatgtcaacacttctcacaaaatattttattaccttaaatctctggtacatattttc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
28542697 |
tttctgtagtatatattttcctaaattcgttttctttatctttaatgtcaacacttctcacaaaatatcttatttccttaaatctctggtacatattttc |
28542598 |
T |
|
| Q |
249 |
ttgtagttcattgataacaaaacttcaacaactgactgaacacattttgtttacaatactttcgtttgttgaaagcactagatgatggatacagcactag |
348 |
Q |
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| T |
28542597 |
ttgtagttcattgataacaaaacttcaacaaccgactgaacacattttgtttacaatactttcgtttgttgaaagcactagatgatggatacagcactag |
28542498 |
T |
|
| Q |
349 |
atgatggttgctcatccagccccttctaaatgcagcattctaccggaagcgagctttcggtagtgtattaaggggacgagatgagcaagcaatcgcctct |
448 |
Q |
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| T |
28542497 |
atgatggttgctcatccagccccttctaaatgcagcattctaccggaagcgagctttcggtagtgtattaaggggatgagatgagcaagcaatcgcctct |
28542398 |
T |
|
| Q |
449 |
acattgagcttgaaagtgacagtgnnnnnnnnnnngtttgttgcatttgagcaagcacggtcaaaatcacctctacattgagttcttacggtcgcaccac |
548 |
Q |
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| T |
28542397 |
acattgagcttgaaagtgacagtg-aaaaaaaaaagtttgttgcatttgagcaagcacggtcaaaatcacctctacattgagttcttacggtcgcaccac |
28542299 |
T |
|
| Q |
549 |
cctttttcccgtcggagttgggtttgcttttggtttacttgctagatccgccgccttaacctgttttctggcgctgccgtgctccgttttccggtgaagg |
648 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28542298 |
cctttttcccgtcggagttgggtttgcttttggtttacttgctagatccaccgccttaacctgttttctggcgccgccgtgctccgttttccggtgaagg |
28542199 |
T |
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| Q |
649 |
ggtgttgttttagttcgttttctgggtcagctcttgatgtcttgatgagatcttttttgagatgttatggcttgccgtcgctgtttgttttggtgtgccg |
748 |
Q |
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| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
28542198 |
gttgttgttttagttcgttttccgggttagctcttgatgtcttgatgagatcttttttgagatgttctggcttgccgtcgctgtttgttttggtgcgccg |
28542099 |
T |
|
| Q |
749 |
ctgtcaagctctccttgagcgtcc |
772 |
Q |
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|||||||||||||||||||||||| |
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| T |
28542098 |
ctgtcaagctctccttgagcgtcc |
28542075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 772
Target Start/End: Complemental strand, 24440111 - 24439965
Alignment:
| Q |
627 |
gtgctccgttttccggtgaaggggtgttgttttagttcgttttctgggtcagctcttgatgtcttgatgagatct--tttttgagatgttatggcttgcc |
724 |
Q |
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||||||| |||||||||||||||||||| |||| ||| |||| |||||||||||| ||| || |||| ||||| |||| ||| |||| ||||| || |
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| T |
24440111 |
gtgctccattttccggtgaaggggtgtttttttggtttattttttgggtcagctctcgatctcacgatgtgatctccttttcgaggtgttttggctggcg |
24440012 |
T |
|
| Q |
725 |
gtcgctgtttgttttggtgtgccgctgtcaagctctccttgagcgtcc |
772 |
Q |
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| T |
24440011 |
gtcgctgtttg-ttcggtgctccgccgtgaagctctccttgagcgtcc |
24439965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 783
Target Start/End: Complemental strand, 14636381 - 14636321
Alignment:
| Q |
722 |
gccgtcgctgtttgttttggtgtgccgctgtcaagctctccttgagcgtccttgcctctctg |
783 |
Q |
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||||||||||| ||||| |||||||||| |||||||||||||||||||| | | |||||||| |
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| T |
14636381 |
gccgtcgctgtctgttt-ggtgtgccgccgtcaagctctccttgagcgttccttcctctctg |
14636321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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