View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_12 (Length: 419)
Name: NF10265_high_12
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 40084387 - 40084008
Alignment:
| Q |
19 |
aaagttagcataggaaagcaagcaattaacatggttgattttattgcaaaagctggcaaagcctttcttaataaatgatagtaatagtatttttaaatca |
118 |
Q |
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| T |
40084387 |
aaagttagcataggaaagcaagcaattaacatggttgattttattgcaaaagctggcaaagcctttcttaataaatgatagtaatagtatttttaaatta |
40084288 |
T |
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| Q |
119 |
agtgatgacgaatgtcgtacctaaaacatggggatttggatcccctaatgttgttcattctctcatgttgttcatcatg-tttaatctaaaccatttact |
217 |
Q |
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| T |
40084287 |
agtgatgacgaacgtcgtacctaaaacat-gggatttggatcccctaatgttgttcattctctcatgttgttcatcatgttttaatctcaaccaattact |
40084189 |
T |
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| Q |
218 |
aac--nnnnnnnnnnnnnctcttctttattattcttgtcgttcatgtattaatcaaccgttgaattgaaaaatgagatatggccgaaccaaaaaggccgg |
315 |
Q |
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| T |
40084188 |
aactttttttttctttctctcttctttattattcttgtcgttcatgtatcaatcaaccgttgaattgaaaaatgagatatggttgaaccaaaagggccgg |
40084089 |
T |
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| Q |
316 |
agagaatccacatttaaaacatggatgtcttttattgtaaagaaaaatattcacatgtcttaagagcataataagaaacta |
396 |
Q |
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| T |
40084088 |
agagaatccacatttaaaacatggttgtcttttattgtaaaaaaaaatattcacatgtcttaagagcatactaacaaacta |
40084008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 50324861 - 50324794
Alignment:
| Q |
256 |
ttcatgtattaatcaaccgttgaattgaaaaatgagatatggccgaaccaaaaaggccggagagaatc |
323 |
Q |
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| T |
50324861 |
ttcatgtatcaatcaaccattgatttggaaaaggagagatgtctgaaccaaaaaggcaggagagaatc |
50324794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 31858341 - 31858245
Alignment:
| Q |
234 |
ctcttctttattattcttgtcg--ttcatgtattaatcaaccgttgaattgaaaaatgagatatggccgaaccaaaaaggccggagagaatccacat |
328 |
Q |
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| T |
31858341 |
ctcttctttattattatttttgccttcatgtatcaatcaattgttagattgaaaaaggagagaaggctgaaccaaaaaggctggagaggatccacat |
31858245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 30623290 - 30623234
Alignment:
| Q |
256 |
ttcatgtattaatcaaccgttgaattgaaaaatgagatatggccgaaccaaaaaggc |
312 |
Q |
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| T |
30623290 |
ttcatgtatcaatcaactattgaattaaaaaaggagagatggctgaaccaaaaaggc |
30623234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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