View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_15 (Length: 343)
Name: NF10265_high_15
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 40107983 - 40108321
Alignment:
| Q |
1 |
agacatttttcaattttgaattctagcattgtacttacttttagccttatttacccaaaatacgtgaaattggtactgaggacttccaactcaaaaagat |
100 |
Q |
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| T |
40107983 |
agacatttttcaattttgaattctagcattgtacttacttttagccttatttacccaaaatacgtgaaattggtactgaggacttccaactcaaaaagat |
40108082 |
T |
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| Q |
101 |
a--------ttataacaatttgcaacgagtactat---a---ataataataataagataaagttgttgttgtcgtatacgtgttgtactctcaaagaaaa |
186 |
Q |
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| T |
40108083 |
actataagtttataacaatttgcaacgagtactattataataataataataataagataaagttgttgttgtcgtatacgtgttgtactctcaaagaaaa |
40108182 |
T |
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| Q |
187 |
gtctttgttcatccttggaaaaagacaagaatggaggcagtttttggctgtgttattcgtcgtcatcatcacactgttcaaccattgtttttatgcagag |
286 |
Q |
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| T |
40108183 |
gtctttgttcatccttggaaaaagacaagaatggaggcagtttttggctgtgttattcgtcgtcatcatcacactgttcaaccattgtttttatgcagag |
40108282 |
T |
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| Q |
287 |
aatttattatcaaacgtcaaattttgttcggtgtgtatt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40108283 |
aatttattatcaaacgtcaaattttgttcggtgtgtatt |
40108321 |
T |
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