View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10265_high_16 (Length: 336)
Name: NF10265_high_16
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_16 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
| [»] scaffold0645 (1 HSPs) |
| | |
|
| [»] scaffold0248 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 38082682 - 38083004
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38082682 |
tctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggataacagtaatccacaataaaaaatggacgaggag |
38082781 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatactttt-gttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgc |
199 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
38082782 |
atgggtttgatatattgacccggtatactttttgttattagcagattgacccattaattaatttttaaaaaaaaatttccagattattttcttcttctgc |
38082881 |
T |
|
| Q |
200 |
ataactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38082882 |
ataactgctttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataat |
38082981 |
T |
|
| Q |
300 |
ttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38082982 |
ttgggaacaaaaattgattcatc |
38083004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 8206122 - 8205800
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8206122 |
tctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcgctataacatggacaacagtaatccacaataaaaaattgacgaggag |
8206023 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgca |
200 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
8206022 |
atgggtttgatatattgacccggtatacttttgttatcagcagattgacccattaattgattttaaaaaaaaaaattccagattattttcttcttctgca |
8205923 |
T |
|
| Q |
201 |
taactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8205922 |
taactgttttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaactatttcttccttcaatccattcataatt |
8205823 |
T |
|
| Q |
301 |
tgggaacaaaaattgattcatct |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8205822 |
tgggaacaaaaattgattcatct |
8205800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 22972836 - 22973164
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22972836 |
tctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
22972935 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttc------nnnnnnnnnnttcgagattattttcttct |
194 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
22972936 |
atgggtttgatatattgatccggtatacttttgttattagcatattgatccattaattaattttcaaaaaaaaaaaaaaaattccagattattttcttct |
22973035 |
T |
|
| Q |
195 |
tctgcataactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattc |
294 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22973036 |
tctgcataactgttttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaattcattc |
22973135 |
T |
|
| Q |
295 |
ataatttgggaacaaaaattgattcatct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22973136 |
ataatttgggaacaaaaattgattcatct |
22973164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 8203956 - 8204017
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
8203956 |
tttttcaacccaaccattacttccttcaatccattcgtaatttggga--aaaaattgattcatc |
8204017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 8205750 - 8205689
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
8205750 |
tttttcaacccaaccattacttccttcaatccattcgtaatttggga--aaaaattgattcatc |
8205689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 22974374 - 22974313
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
22974374 |
tttttcaacccaactatttcttccttcaatccattcgtaatttgg--aaaaaaattgattcatc |
22974313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 22973214 - 22973274
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
22973214 |
tttttcaacccaaccata-cttccttcaatccattcgtaatttggga--aaaaattgattcatc |
22973274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 38083948 - 38083887
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
38083948 |
tttttcaacctaaccgttacttccttcaatccattcgtaatttgg--aaaaaaattgattcatc |
38083887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 65075 - 65396
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
65075 |
tctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacagcagtaatccacaataaaaaatggacgaggag |
65174 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgca |
200 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
65175 |
atgggtttgatatattgacccggtatacttttgttattagcagattaatccattaattaattttcaaaaaaaaattttcagattattttcttcttctgca |
65274 |
T |
|
| Q |
201 |
taactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
65275 |
taactgctttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaaccatttattccttcaatccattcataatt |
65374 |
T |
|
| Q |
301 |
tgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
65375 |
tgggaacaaaaattgattcatc |
65396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 43288 - 43227
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
43288 |
tttttcaacctaaccattacttccttcaatccattcgtaatttggga--aaaaattgattcatc |
43227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 40908019 - 40907698
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40908019 |
tctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacagcagtaatccacaataaaaaatggacgaggag |
40907920 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgca |
200 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
40907919 |
atgggtttgatatattgacccggtatacttttgttattagcagattaatccattaattaattttcaaaaaaaaattttcagattattttcttcttctgca |
40907820 |
T |
|
| Q |
201 |
taactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40907819 |
taactgctttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaaccatttattccttcaatccattcataatt |
40907720 |
T |
|
| Q |
301 |
tgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40907719 |
tgggaacaaaaattgattcatc |
40907698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 83 - 323
Target Start/End: Complemental strand, 32257974 - 32257734
Alignment:
| Q |
83 |
taaaaaatggacgaggagatgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgaga |
182 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
32257974 |
taaaaaatggacgaggagatgggtttgatatattgacccggtaaacttttgttattagcagattgacccattaattaatttaaaaaaaaaaaattccaga |
32257875 |
T |
|
| Q |
183 |
ttattttcttcttctgcataactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttcc |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32257874 |
ttattttcttcttctacataactgctttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttcc |
32257775 |
T |
|
| Q |
283 |
ttcaatccattcataatttgggaacaaaaattgattcatct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32257774 |
ttcaatccattcataatttgggaacaaaaattgattcatct |
32257734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 32257684 - 32257624
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
32257684 |
tttttcaacccaaccattacttccttcaatccattcgtaatttggg---aaaaattgattcatc |
32257624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 40906730 - 40906791
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
40906730 |
tttttcaacctaaccattacttccttcaatccattcgtaatttggga--aaaaattgattcatc |
40906791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 32256580 - 32256641
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||| ||||||| || ||||||||||||||| |
|
|
| T |
32256580 |
tttttcaacctaaccattacttccttcaatctattcgtaatttgcga--aaaaattgattcatc |
32256641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0645 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0645
Description:
Target: scaffold0645; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 2193 - 2502
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2193 |
tctaaattaccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
2292 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgca |
200 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
2293 |
atgggtttgatatattgaccaggtatacttttgttattagcagattgacccattaattaattttcaaaaaaaaaattctagataattttcttcttctgca |
2392 |
T |
|
| Q |
201 |
taactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2393 |
taactgctttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
2492 |
T |
|
| Q |
301 |
tgggaacaaa |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
2493 |
tgggaacaaa |
2502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 11560502 - 11560193
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11560502 |
tctaaattaccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
11560403 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgca |
200 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
11560402 |
atgggtttgatatattgaccaggtatacttttgttattagcagattgacccattaattaattttcaaaaaaaaaattctagataattttcttcttctgca |
11560303 |
T |
|
| Q |
201 |
taactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11560302 |
taactgctttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
11560203 |
T |
|
| Q |
301 |
tgggaacaaa |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
11560202 |
tgggaacaaa |
11560193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 46044770 - 46044448
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46044770 |
tctaacttgccttgggaaagaggtgggtaaactgcccatcttgacgtggcagcactataatatggacaacaataatccacaataaaaaatggacgaggag |
46044671 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgca |
200 |
Q |
| |
|
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
46044670 |
atgagtttgatatattgacccggtatacttttgttattagcagattgacccattaattaattttcaaaaaaaaaaatccagattattttcttattctgca |
46044571 |
T |
|
| Q |
201 |
taactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46044570 |
taactgctttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
46044471 |
T |
|
| Q |
301 |
tgggaacaaaaattgattcatct |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46044470 |
tgggaacaaaaattgattcatct |
46044448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 29533093 - 29532769
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29533093 |
tctaaattaccttgggaaagaggtgggtaaactgcctatcttgacgtgacatcactataacatggacaacagtaatccacaatataaaatggacgaggag |
29532994 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttct--tctg |
198 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
29532993 |
atgggtttgatatattgacccggtatacttttgttattagcagattgacccattaattaatttttaaaaagaaatttccagattattttcttcttctctg |
29532894 |
T |
|
| Q |
199 |
cataactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataa |
298 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29532893 |
cataactgttttcttctccaatatcaaataactgctttcttcttctacgttttcttttagtttttcaatccaaccatttcttccttcaatccattcataa |
29532794 |
T |
|
| Q |
299 |
tttgggaacaaaaattgattcatct |
323 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29532793 |
tttgggaacaaaaattgattcatct |
29532769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 11537037 - 11537098
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
11537037 |
tttttcaacccaaccattacttccttcaatccattcgtaatttggga--aaaaattgattcatc |
11537098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 29532719 - 29532657
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
29532719 |
tttttcaacccaaccattacttccttcaatccattcgtaatttgggaa-aaaaaatgattcatc |
29532657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 46042760 - 46042821
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||| |||||||||| ||||||||||||||| |
|
|
| T |
46042760 |
tttttcaacctaaccattacttccttcaatctattcgtaatttggga--aaaaattgattcatc |
46042821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 46044398 - 46044337
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
46044398 |
tttttcaacccaatcattacttccttcaatccatttgtaatttgg--aaaaaaattgattcatc |
46044337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 13432410 - 13432732
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13432410 |
tctaaattgtcttgggaaagaggtgggtaaactgctcatcttaacgtggcatcactataacatggacaacagtaattcacaataaaaaatggacgaggag |
13432509 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgca |
200 |
Q |
| |
|
||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
13432510 |
atgagtttgatatattgacccagtatacttttgttattagcagattgacccattaattaatttttaaaaaaaaaattccaaattattttcttcttctgca |
13432609 |
T |
|
| Q |
201 |
taactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatt |
300 |
Q |
| |
|
|||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13432610 |
taactgttttcttcttcaatatcaaataactgctttcttcttctacgttttcttttagtttttcaatccaaccatttcttccttcaatccattcataatt |
13432709 |
T |
|
| Q |
301 |
tgggaacaaaaattgattcatct |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13432710 |
tgggaacaaaaattgattcatct |
13432732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 13434640 - 13434579
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
13434640 |
tttttcaacccaaccattacttccttcaatccattcgtaatttggga--aaaaattgattcatc |
13434579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 13432782 - 13432843
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
13432782 |
tttttcaacccaaccattacttccttcaatccattcgtaatttggta--aaaaattgattcatc |
13432843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 19880417 - 19880089
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
19880417 |
tctaacttgccttgggaatgaggtgggtaaaccgccaatcttgacgtggcatcactataacatggacaacagcaatctacaataaaaaatggacgaggag |
19880318 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaattttcnnnnnnnnnnttcgagattattttcttcttctgc- |
199 |
Q |
| |
|
|||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
19880317 |
atgggtttgatatattgacccagtatacttttgttattagcagattgacccattaattaaatttcaaaaaaaaaattccagattattttcttcttctgca |
19880218 |
T |
|
| Q |
200 |
-----ataactgctttcttctccaatatcaaatagctgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19880217 |
taactataactgctttcttctccaatatcaaataattgctttcttcttctaccttttcttttagtttttcaacccaaccatttcttccttcaatccattc |
19880118 |
T |
|
| Q |
295 |
ataatttgggaacaaaaattgattcatct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19880117 |
ataatttgggaacaaaaattgattcatct |
19880089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 19880039 - 19879978
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
19880039 |
tttttcaacccaaccattgcttccttcaatccattcgtaatttggga--aaaaattgattcatc |
19879978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 19878100 - 19878161
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
19878100 |
tttttcaacctaaccattacttccttcaatccattcgtaatttggga--aaaaattgattcatc |
19878161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42808946 - 42809192
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||| | || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
42808946 |
tctaacttgctttgggaaagaggtgggtaaattacccatcttgaggtggcatcactataacatggacaactgtaatccacaataaaaaatggactaggag |
42809045 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaatt---ttcnnnnnnnnnnttcgagattattttcttcttct |
197 |
Q |
| |
|
|||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
42809046 |
atggatttgatatattgacctggtatacttttgttattagcagattgacccattaattaactaaaaaaaaataaaaaattccagattattttcttcttct |
42809145 |
T |
|
| Q |
198 |
gcataactgctttcttctccaatatcaaatagctgctttcttcttct |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
42809146 |
gcataactgctttcttctccaatatcaaataaccgctttcttcttct |
42809192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 17751804 - 17751963
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| ||||| |
|
|
| T |
17751804 |
tctaacttgccttgggaaagaggtgggtaaactacccatcttgacgtggcatcactataacatggacaactgtaatctacaccaaaaaatggattaggag |
17751903 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaa |
160 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17751904 |
atgggtttgatatattgacccggtatacttttgttattagcagattgacccattaattaa |
17751963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 1533594 - 1533752
Alignment:
| Q |
1 |
tctaaattgccttgggaaagaggtgggtaacctgccgatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatggacgaggag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||| |||||| ||| |||||||||| ||||| |
|
|
| T |
1533594 |
tctaacttgccttgggaaagaggtgggtaaactacccatcttgacgtggcatcac-ataacatggacaactgtaatctacaccaaaaaatggattaggag |
1533692 |
T |
|
| Q |
101 |
atgggtttaagatattgacccggtatacttttgttattagcagattgacccattaattaa |
160 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1533693 |
atggatttgatatattgacccggtatacttttgttattagcagattgacccattaattaa |
1533752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 17751999 - 17752088
Alignment:
| Q |
231 |
tgctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
17751999 |
tgctttcttcttctaccttttctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttagga--aaaaattgattcatc |
17752088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 322
Target Start/End: Original strand, 1533790 - 1533878
Alignment:
| Q |
232 |
gctttcttcttctacgttttcttttagtttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
1533790 |
gctttcttcttctaccttttctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttagga--aaaaattgattcatc |
1533878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 15640 - 15579
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
15640 |
tttttcaacctaaccattacttccttcaatccatttgtaatttggga--aaaaattgattcatc |
15579 |
T |
|
Back To:
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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 278332 - 278393
Alignment:
| Q |
259 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
322 |
Q |
| |
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|||||||||| ||| ||| ||||||||||||||||| |||||||| | ||||||||||||||| |
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|
| T |
278332 |
tttttcaacctaactattacttccttcaatccattcgtaatttgg--aaaaaaattgattcatc |
278393 |
T |
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