View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_high_17 (Length: 331)

Name: NF10265_high_17
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_high_17
NF10265_high_17
[»] chr5 (15 HSPs)
chr5 (12-331)||(1043775-1044094)
chr5 (15-330)||(1033386-1033706)
chr5 (216-330)||(1053237-1053351)
chr5 (221-330)||(1071326-1071435)
chr5 (220-324)||(1065598-1065702)
chr5 (217-330)||(1058503-1058616)
chr5 (220-330)||(1640850-1640960)
chr5 (231-325)||(1046577-1046671)
chr5 (15-88)||(1065384-1065457)
chr5 (15-82)||(1052984-1053051)
chr5 (16-82)||(1046325-1046391)
chr5 (15-88)||(1071123-1071196)
chr5 (17-82)||(1058322-1058387)
chr5 (201-281)||(1041528-1041607)
chr5 (20-82)||(1641080-1641142)
[»] chr3 (2 HSPs)
chr3 (152-330)||(44171341-44171521)
chr3 (152-330)||(44191637-44191817)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 1043775 - 1044094
Alignment:
Q  12 agcacagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttacaggtttttacaaattttgtctaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043775 agcacagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttacaggtttttacaaattttgtctaa 1043874  T
Q  112 aattgaaaaataccatagtacaatattgatattttttcagaaacatgactatttgttgctttaaagcacaaggacattttttaaatctcctaacataatc 211  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1043875 aattgaaaaatgccatagtacaatattgatattttttcagaaacatgactatttgttgctttaaagcacaaggacatttttcaaatctcctaacataatc 1043974  T
Q  212 aatgtggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043975 aatgtggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacag 1044074  T
Q  312 atgaatacggtggatccctc 331  Q
    ||||||||||||||||||||    
T  1044075 atgaatacggtggatccctc 1044094  T

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Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 1033386 - 1033706
Alignment:
Q  15 acagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttacaggtttttacaaattttgtctaaaat 114  Q
    ||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||   | | | |||||||||  || |||      
T  1033386 acagatgaaattcctaatattgtaaatgacttcagactcgctgcaagaaatgctattgaagctggtaagtttgtggatctgtacaaatttattccaaac- 1033484  T
Q  115 tgaaaaat------accatagtacaatattgatattttttcagaaacatgactatttgttgctttaaagcacaa--ggacattttttaaatctcctaaca 206  Q
     ||||  |      | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||  ||   |||||||||  |||||  ||||||    
T  1033485 -gaaatgtgattcaatcatagtacaatattgatattttt-cagaaacaggactatttgttgctttaaagggcagtgggacattttgaaaatcaactaaca 1033582  T
Q  207 taatcaatgtggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacag 306  Q
    |  |||||||| ||||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1033583 tgctcaatgtgatgcaaattgcaggttttgatggtgttgaacttcatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgatag 1033682  T
Q  307 aacagatgaatacggtggatccct 330  Q
    |||||||||||| |||||||||||    
T  1033683 aacagatgaatatggtggatccct 1033706  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 216 - 330
Target Start/End: Original strand, 1053237 - 1053351
Alignment:
Q  216 tggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatga 315  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || ||||||||||||||    
T  1053237 tggtgcaaattgtaggttttgatggggttgaaatccatggagctcatggctacctagttgaacaattcatgaaagataaagcaaacgacagaacagatga 1053336  T
Q  316 atacggtggatccct 330  Q
    ||| |||||| ||||    
T  1053337 atatggtggaaccct 1053351  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 1071326 - 1071435
Alignment:
Q  221 caaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatgaatacg 320  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |    
T  1071326 caaattgcaggatttgatggggttgaaatccatggagctcatggctacctccttgaacaattcatgaaagataaagtgaatgacaggacagatgagtatg 1071425  T
Q  321 gtggatccct 330  Q
    ||||||||||    
T  1071426 gtggatccct 1071435  T

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Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 220 - 324
Target Start/End: Original strand, 1065598 - 1065702
Alignment:
Q  220 gcaaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatgaatac 319  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||     
T  1065598 gcaaattgcaggatttgatggggttgaaatccatggagctcatggctacctccttgagcaattcatgaaagataaagtgaatgacaggacagatgaatat 1065697  T
Q  320 ggtgg 324  Q
    |||||    
T  1065698 ggtgg 1065702  T

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Target: chr5; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 217 - 330
Target Start/End: Original strand, 1058503 - 1058616
Alignment:
Q  217 ggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatgaa 316  Q
    ||||||||||| ||| |||||||| |||||||||||||| ||| |||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  1058503 ggtgcaaattgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaa 1058602  T
Q  317 tacggtggatccct 330  Q
    || |||||||||||    
T  1058603 tatggtggatccct 1058616  T

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Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 1640960 - 1640850
Alignment:
Q  220 gcaaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatgaatac 319  Q
    |||||||| |||||||||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||| |||| ||| |||||    
T  1640960 gcaaattgcaggttttgatggagttgagatccatggggctcacggttacctacttgagcaatttatgaaagataaagtgaatgaccgaactgataaatac 1640861  T
Q  320 ggtggatccct 330  Q
    |||||| ||||    
T  1640860 ggtggaaccct 1640850  T

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Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 1046577 - 1046671
Alignment:
Q  231 gttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatgaatacggtgga 325  Q
    |||||||||| |||||||| | ||| |||  ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1046577 gttttgatggggttgaaattcgtggggctactggatacctacttgagcaattcatgaaagataaagtgaatgacagaacagatgaatatggtgga 1046671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 1065384 - 1065457
Alignment:
Q  15 acagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttac 88  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  1065384 acagatgaaattcctaacattgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaactttac 1065457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 1052984 - 1053051
Alignment:
Q  15 acagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 82  Q
    ||||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  1052984 acagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 1053051  T

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Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 1046325 - 1046391
Alignment:
Q  16 cagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 82  Q
    |||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  1046325 cagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 1046391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 1071123 - 1071196
Alignment:
Q  15 acagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttac 88  Q
    ||||||||||||||  | ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  1071123 acagatgaaattccaaacattgtcaatgacttcagactcgctgcaagaaatgctattgaagctggtaactttac 1071196  T

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Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 1058322 - 1058387
Alignment:
Q  17 agatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 82  Q
    ||||||||||||  |  |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1058322 agatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa 1058387  T

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Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 1041528 - 1041607
Alignment:
Q  201 ctaacataatcaatgtggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaat 281  Q
    |||||||  |||||||||||||||||  |||||||||||| | ||||||||||| | ||||||||||||||||||| ||||    
T  1041528 ctaacatgctcaatgtggtgcaaatttcaggttttgatgg-gatgaaatccatgcaactcatggctacctacttgagcaat 1041607  T

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Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 1641142 - 1641080
Alignment:
Q  20 tgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 82  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| |||||||| | |||||||||    
T  1641142 tgaaattcctcgtatcgtcaatgacttcagacttgctgcaaggaatgctatagcagctggtaa 1641080  T

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Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 44171521 - 44171341
Alignment:
Q  152 aaacatgactatttgttgctttaaagcacaa--ggacattttttaaatctcctaacataatcaatgtggtgcaaattgaaggttttgatggagttgaaat 249  Q
    ||||||||||||||||||||||||||  ||   |||||||||  |||||   ||||||  |||||||| ||||||||| |||||||||||| || |||||    
T  44171521 aaacatgactatttgttgctttaaagggcagtgggacattttgaaaatcaagtaacatgctcaatgtgatgcaaattgcaggttttgatggtgtggaaat 44171422  T
Q  250 ccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatgaatacggtggatccct 330  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||    
T  44171421 tcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaatggcaaaacagatgaatatggtggatccct 44171341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 44191817 - 44191637
Alignment:
Q  152 aaacatgactatttgttgctttaaagcacaa--ggacattttttaaatctcctaacataatcaatgtggtgcaaattgaaggttttgatggagttgaaat 249  Q
    ||||||||||||||||||||||||||  ||   |||||||||  |||||   ||||||  |||||||| ||||||||| |||||||||||| || |||||    
T  44191817 aaacatgactatttgttgctttaaagggcagtgggacattttgaaaatcaagtaacatgctcaatgtgatgcaaattgcaggttttgatggtgtggaaat 44191718  T
Q  250 ccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatgaatacggtggatccct 330  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||    
T  44191717 tcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaatggcaaaacagatgaatatggtggatccct 44191637  T

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