View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_high_19 (Length: 326)

Name: NF10265_high_19
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_high_19
NF10265_high_19
[»] chr4 (2 HSPs)
chr4 (101-190)||(36729511-36729600)
chr4 (115-190)||(31807076-31807151)
[»] chr5 (5 HSPs)
chr5 (101-187)||(28111620-28111706)
chr5 (112-189)||(3138049-3138126)
chr5 (115-189)||(28376891-28376965)
chr5 (112-189)||(36220550-36220626)
chr5 (115-183)||(26316926-26316994)
[»] chr1 (2 HSPs)
chr1 (190-322)||(47480171-47480297)
chr1 (119-184)||(34717603-34717668)
[»] chr8 (4 HSPs)
chr8 (119-182)||(40375232-40375295)
chr8 (115-182)||(22633105-22633172)
chr8 (120-185)||(38661053-38661118)
chr8 (125-189)||(22939032-22939096)
[»] chr3 (5 HSPs)
chr3 (119-189)||(16138554-16138624)
chr3 (118-189)||(5398712-5398783)
chr3 (115-182)||(36234194-36234261)
chr3 (115-190)||(41239199-41239274)
chr3 (119-185)||(40800451-40800517)
[»] chr7 (4 HSPs)
chr7 (115-183)||(12923857-12923925)
chr7 (115-183)||(12912118-12912186)
chr7 (116-175)||(20890213-20890272)
chr7 (117-173)||(32439909-32439965)
[»] scaffold0237 (1 HSPs)
scaffold0237 (112-189)||(4539-4616)
[»] chr6 (1 HSPs)
chr6 (112-189)||(29858337-29858414)
[»] chr2 (2 HSPs)
chr2 (115-182)||(9846738-9846806)
chr2 (119-182)||(43789437-43789500)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 36729600 - 36729511
Alignment:
Q  101 cttcaaccagttggaactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacca 190  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||| |||| |||||||    
T  36729600 cttcaaccagttggaactgccacctgtcctggggaatggcactttcccatggtgggaaaaaagtgttcatccccaggttaaatgtcacca 36729511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 31807076 - 31807151
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacca 190  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||| || |  |||||||||| ||||||| |||||    
T  31807076 aactgccacctgtcctgggaaatggaactttcccatggtgggaaagaactccccattcccagactaaacgccacca 31807151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 28111706 - 28111620
Alignment:
Q  101 cttcaaccagttggaactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtca 187  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||| |||| ||||    
T  28111706 cttcaaccagttggaactgccacctgtcctggggaatggcactttcccatggtgggaaaaaagtgttcatccccaggttaaatgtca 28111620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 3138126 - 3138049
Alignment:
Q  112 tggaactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacc 189  Q
    |||||| ||||||||||||||||| ||| ||||| ||||||||||||  |||| |||||||||||| ||||| |||||    
T  3138126 tggaaccgccacctgtcctgggaattggaactttcccatggtgggaaccaagtttccattcccaggttaaacttcacc 3138049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 28376965 - 28376891
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacc 189  Q
    |||||||||||||||||| || ||  ||||| | ||||| ||||| |||| |||||||||||||||||| |||||    
T  28376965 aactgccacctgtcctggaaattgaaactttccaatggtaggaaacaagtttccattcccaggctaaacttcacc 28376891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 36220550 - 36220626
Alignment:
Q  112 tggaactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacc 189  Q
    ||||||||| ||||||| |||||| |||  ||||||||||||||| |  |||| |||||||||||| ||||| |||||    
T  36220550 tggaactgctacctgtcttgggaattggagcttttccatggtggg-accaagtttccattcccaggttaaacttcacc 36220626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 26316994 - 26316926
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaac 183  Q
    ||||| || ||||||||||| | || ||||| ||||||||||||| |||| ||| |||||||| |||||    
T  26316994 aactgacagctgtcctgggagaagggactttcccatggtgggaaagaagtttcctttcccaggttaaac 26316926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 322
Target Start/End: Original strand, 47480171 - 47480297
Alignment:
Q  190 ataatttcatacctagtttatttccaaaacattgctcnnnnnnnnggactgcgtgcctaattgttatcaatgcctttttctttttcggacatttactatg 289  Q
    |||||||||||| ||||||||||||||||||||||||        |||||||||    | ||||||||||||||||||||||||||||||| ||||||||    
T  47480171 ataatttcatac-tagtttatttccaaaacattgctcttttttt-ggactgcgt----agttgttatcaatgcctttttctttttcggaca-ttactatg 47480263  T
Q  290 ttgattgatt-actccatcatctctctgcttctc 322  Q
    |||||||||| |||||||||||||||| ||||||    
T  47480264 ttgattgattaactccatcatctctcttcttctc 47480297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 34717668 - 34717603
Alignment:
Q  119 gccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacg 184  Q
    |||||||| ||||| ||| |||| ||| ||||||||||||| || |||||  ||||||||||||||    
T  34717668 gccacctggcctggaaaagggcagtttcccatggtgggaaagaactgtccgatcccaggctaaacg 34717603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 40375232 - 40375295
Alignment:
Q  119 gccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaa 182  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  40375232 gccacctgtcctgggaaatggcactttcccatggtgggaaagaagtatccattcccaggctaaa 40375295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 22633105 - 22633172
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaa 182  Q
    |||||||| ||||||||||| ||||  |||| |||| |||||||| |||| |||||||||||||||||    
T  22633105 aactgccagctgtcctgggatatgggtctttcccatagtgggaaagaagtatccattcccaggctaaa 22633172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 38661053 - 38661118
Alignment:
Q  120 ccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgt 185  Q
    |||| |||| |||||| ||| ||||| ||||||| ||||| |||| |||||||||||| |||||||    
T  38661053 ccacatgtcttgggaattggaactttcccatggtaggaaacaagtttccattcccaggttaaacgt 38661118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 22939032 - 22939096
Alignment:
Q  125 tgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacc 189  Q
    |||||| | ||| |||||||| ||||||||||||| || |  |||||||||||||||| ||||||    
T  22939032 tgtcctagaaaagggcactttcccatggtgggaaagaactacccattcccaggctaaatgtcacc 22939096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 16138554 - 16138624
Alignment:
Q  119 gccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacc 189  Q
    |||||||||||||| ||| | |||||| |||||||||||||||| ||||| ||||||||||||||| ||||    
T  16138554 gccacctgtcctggaaaaggacactttcccatggtgggaaaaaactgtcccttcccaggctaaacgccacc 16138624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 5398712 - 5398783
Alignment:
Q  118 tgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacc 189  Q
    |||||||||||||||||| ||| ||||| ||||||||||||  |||| |||||||||||| ||||| |||||    
T  5398712 tgccacctgtcctgggaattggaactttcccatggtgggaaccaagtttccattcccaggttaaacttcacc 5398783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 36234194 - 36234261
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaa 182  Q
    |||||||| ||||||||||| ||||  |||| |||| |||||||| |||| |||||||||||||||||    
T  36234194 aactgccagctgtcctgggatatgggtctttcccatagtgggaaagaagtatccattcccaggctaaa 36234261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 41239199 - 41239274
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacca 190  Q
    ||||||||||||||||||||| ||  ||||| ||||||||||||  |||| | |||||||||| ||||| ||||||    
T  41239199 aactgccacctgtcctgggaattgaaactttcccatggtgggaaccaagttttcattcccaggttaaacttcacca 41239274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 40800517 - 40800451
Alignment:
Q  119 gccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgt 185  Q
    ||||||||||||||||| ||| ||||| ||||||||||||| |||| |||||| ||||  |||||||    
T  40800517 gccacctgtcctgggaattggaactttcccatggtgggaaacaagtttccatttccagattaaacgt 40800451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 12923857 - 12923925
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaac 183  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||| ||   ||||||||||||||||||    
T  12923857 aactgccacctgtcctgggatatggccctttcccatggtgggaaagaaaattccattcccaggctaaac 12923925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 12912186 - 12912118
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaac 183  Q
    ||||||||||||||||||||  |||| |||| ||||||||||||| ||   ||||||||||||||||||    
T  12912186 aactgccacctgtcctgggatgtggccctttcccatggtgggaaagaaaattccattcccaggctaaac 12912118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 20890272 - 20890213
Alignment:
Q  116 actgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattccca 175  Q
    ||||||||||||||||| ||| | |||||| |||||||||||||||| ||||| ||||||    
T  20890272 actgccacctgtcctggaaaaggacactttcccatggtgggaaaaaactgtcctttccca 20890213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 32439909 - 32439965
Alignment:
Q  117 ctgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcc 173  Q
    |||||| ||||||||||| |||| ||||| ||||||||||||| |||| ||||||||    
T  32439909 ctgccagctgtcctgggatatggaactttcccatggtgggaaacaagtatccattcc 32439965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 4539 - 4616
Alignment:
Q  112 tggaactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacc 189  Q
    |||||| ||||||||||||||||| ||| ||||| | ||||||||||  |||| |||||||||||| ||||| |||||    
T  4539 tggaaccgccacctgtcctgggaattggaactttcctatggtgggaaccaagtttccattcccaggttaaacttcacc 4616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 29858337 - 29858414
Alignment:
Q  112 tggaactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaacgtcacc 189  Q
    |||||| ||||||||||||||||| ||| ||||| | ||||||||||  |||| |||||||||||| ||||| |||||    
T  29858337 tggaaccgccacctgtcctgggaattggaactttcctatggtgggaaccaagtttccattcccaggttaaacttcacc 29858414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 9846738 - 9846806
Alignment:
Q  115 aactgccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccatt-cccaggctaaa 182  Q
    |||||||||||||||||||| |||||  ||| ||||||||| ||| |||| |||||| |||||||||||    
T  9846738 aactgccacctgtcctgggatatggccatttcccatggtggaaaagaagtatccattccccaggctaaa 9846806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 43789500 - 43789437
Alignment:
Q  119 gccacctgtcctgggaaatggcacttttccatggtgggaaaaaagtgtccattcccaggctaaa 182  Q
    ||||||||| ||||||||||   |||| ||||||||||||| |||| |||||||||||| ||||    
T  43789500 gccacctgtactgggaaatgaacctttcccatggtgggaaagaagtatccattcccaggttaaa 43789437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University