View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_22 (Length: 307)
Name: NF10265_high_22
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_22 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 151 - 307
Target Start/End: Complemental strand, 1316434 - 1316278
Alignment:
| Q |
151 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
250 |
Q |
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| T |
1316434 |
ttaggctctggacaatatgtttatgtaaaattgcatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
1316335 |
T |
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| Q |
251 |
tcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaa |
307 |
Q |
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| T |
1316334 |
tcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaa |
1316278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 1316627 - 1316474
Alignment:
| Q |
1 |
aaaactggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtg |
100 |
Q |
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| T |
1316627 |
aaaactggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtg |
1316528 |
T |
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| Q |
101 |
cccgggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
154 |
Q |
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| T |
1316527 |
cctgggaggcagggagataatgctggaaaaactagttatcttggttaaatttag |
1316474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 43486758 - 43486621
Alignment:
| Q |
1 |
aaaactggattaggatttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagt- |
99 |
Q |
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| T |
43486758 |
aaaattggattaggatttggcatataccatgaaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtg |
43486659 |
T |
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| Q |
100 |
-gcccgggaggcagggagataatgctggaaaaactagt |
136 |
Q |
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| T |
43486658 |
ggaccaggaggcagggagataatgctggaaaaactagt |
43486621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 43483871 - 43483805
Alignment:
| Q |
241 |
ttgaactcgttcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaa |
307 |
Q |
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| T |
43483871 |
ttgaactcattcattactttttcgacctcttcaagaacacgtttcaggatacctacctgaatctaaa |
43483805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 43486549 - 43486463
Alignment:
| Q |
151 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtc |
237 |
Q |
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| T |
43486549 |
ttaggctctggacaatatgtttatgtaaaattgcaatgtttgtttgattttaatgtcaagtcaaatacattaattgcttcaatagtc |
43486463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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