View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_25 (Length: 298)
Name: NF10265_high_25
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 6060570 - 6060841
Alignment:
| Q |
16 |
caagactttgtaacattaactttcataccaaaagccaaactaaactcctcgagcatctccatcacatctggacttaaaaagagaccacctggtggcacat |
115 |
Q |
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| T |
6060570 |
caagactttgtaacattaactttcataccaaaagccaaactaaactcctcgagcatctctatcacatctggacttaaaaagagaccacctggtggcacat |
6060669 |
T |
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| Q |
116 |
gatcccactgagactaatgatggtttgcttgctcttgatggttgtcctcatcttgaatctcttgacatatgtctgcgtctcaatgttaatttgataggaa |
215 |
Q |
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| T |
6060670 |
gatcccactgagactaatgatggtttgcttgctcttgatagttgtcctcatcttgaatctcttgacatatgtctgcgtctcaatgttaatttgataggaa |
6060769 |
T |
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| Q |
216 |
ttttggagaagagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcat |
287 |
Q |
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| T |
6060770 |
tttcggagaagagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcat |
6060841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 252
Target Start/End: Original strand, 6053626 - 6053754
Alignment:
| Q |
127 |
gactaatgatggtttgcttgctctt---gatggttgtcctcatcttgaatctcttgacatatgtctgcgtctcaatgttaatttgataggaattttggag |
223 |
Q |
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| T |
6053626 |
gactaatgatggcttggttgctcttcttgatggctgtcctcaccttgaatctcttgacatacgtcggtgtttcaatgttaatttggtaggaactttgggg |
6053725 |
T |
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| Q |
224 |
aagagatgtaaagaacaaatcaagtattt |
252 |
Q |
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| T |
6053726 |
aagcgatgtaaagagcagatcaagtattt |
6053754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 6043526 - 6043667
Alignment:
| Q |
130 |
taatgatggtttgcttgct---cttgatggttgtcctcatcttgaatctcttgacatatgtctgcgtctcaatgttaatttgataggaattttggagaag |
226 |
Q |
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|||||||||||||| |||| |||||||||||||||| |||||||||||||||||| ||| | || ||||| ||| ||||| ||||| ||||| |||| |
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| T |
6043526 |
taatgatggtttgcgtgctattcttgatggttgtcctctccttgaatctcttgacatacgtcagtgtttcaatcttagtttgagaggaagtttggggaag |
6043625 |
T |
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| Q |
227 |
agatgtaaagaacaaatcaagtatttattgcttccatatgat |
268 |
Q |
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| T |
6043626 |
aaatgtcgtgaacaaataaaagatttacggcttccatatgat |
6043667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 6046848 - 6046931
Alignment:
| Q |
148 |
tcttgatggttgtcctcatcttgaatctcttgacatatgtctgcgtctcaatgttaatttgataggaattttggagaagagatg |
231 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||| | || ||||| ||| ||||| ||||| ||||| |||||||| |
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| T |
6046848 |
tcttgatggttgtcctcaccttgaatctcttgacatacgtcagtgtttcaatcttagtttgagaggaagtttgggaaagagatg |
6046931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 6132618 - 6132558
Alignment:
| Q |
127 |
gactaatgatggtttgcttgc---tcttgatggttgtcctcatcttgaatctcttgacata |
184 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||| ||||||||||| |||||| |
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| T |
6132618 |
gactaatgatggtttgcttgctattcttgatggctgtcttcaccttgaatctctcgacata |
6132558 |
T |
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