View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_28 (Length: 272)
Name: NF10265_high_28
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 34916212 - 34916455
Alignment:
| Q |
18 |
gtatatgtgtgcatgcaaatacaggttgttggttcagctggttggagaacatggtttgaggaaatggtctcatattgctgagaatttgcctggtagaatt |
117 |
Q |
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| T |
34916212 |
gtatatgtgtgcatgcaaatacaggttgttggttcagctggttggagaacatggtttgaggaaatggtctcatattgctgagaatttgcctggtagaatt |
34916311 |
T |
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| Q |
118 |
ggaaaacaatgcagagaaagatggcataatcatctaaagcctgacattaaggtgaattcttatttatcatattatatacatgcttttatctcttagctta |
217 |
Q |
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| T |
34916312 |
ggaaaacaatgcagagaaagatggcataatcatctaaagcctgacattaaggtgaattcttatttatcatattatatatatgcttttatctcttagctta |
34916411 |
T |
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| Q |
218 |
gcacattaacactgacttaggttcaaatttgaaattctcccttt |
261 |
Q |
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| T |
34916412 |
gcacattaacactgacttaggttcaaatttgaaattctcccttt |
34916455 |
T |
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Back To:
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 43865998 - 43866068
Alignment:
| Q |
76 |
aggaaatggtctcatattgctgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataa |
146 |
Q |
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| T |
43865998 |
aggaagtggtctcatattgctctgaagttgcctggaagaatagggaaacaatgcagagaaagatggcataa |
43866068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 21551043 - 21550941
Alignment:
| Q |
68 |
atggtttgaggaaatggtctcatattgctgagaatttgcctggtagaattggaaaacaatgcagagaaagatggcataatcatctaaagcctgacattaa |
167 |
Q |
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| T |
21551043 |
atggattgagaaaatggactgatattgctcagaaattgcctggtagaatgggaaaacagtgtagagagcgatggattaatcatctaaggccagatattaa |
21550944 |
T |
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| Q |
168 |
ggt |
170 |
Q |
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||| |
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| T |
21550943 |
ggt |
21550941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 17176140 - 17176100
Alignment:
| Q |
112 |
agaattggaaaacaatgcagagaaagatggcataatcatct |
152 |
Q |
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| T |
17176140 |
agaattggaaaacaatgcagagagagatggaataatcatct |
17176100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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