View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_37 (Length: 250)
Name: NF10265_high_37
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13854844 - 13855075
Alignment:
| Q |
1 |
ttgcaatgccatgttattcttggcgctagtcattttgtatgttaacaatggccaggacaaaagagggtattctgcatgctgtcgaaatttgtggcttcta |
100 |
Q |
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| T |
13854844 |
ttgcaatgccatgttattcttagcactagtcatttcgtatgttaacaatggccaggacaaaagagggtattctgcatgctgtcgaaatttgtggcttcta |
13854943 |
T |
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| Q |
101 |
ccttgatattttatccctgtaannnnnnnnctgtttccttgtcattttagaaatgagatttttatatgctgcggtttgaaaatcataatcaaatcaccaa |
200 |
Q |
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| T |
13854944 |
ccttgatattttatccctgtaattttttttctgtttccttgtcattttagaaatgagatttttatatgctgcggtttgaaaatcataatcaaatcaccaa |
13855043 |
T |
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| Q |
201 |
atagatgtgactttacccaaatgggatagtat |
232 |
Q |
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| T |
13855044 |
atagatgtgactttacccaaatgggatagtat |
13855075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 10211910 - 10211694
Alignment:
| Q |
26 |
ctagtcattttgtatgttaacaatggccaggacaaaagagggtattctgcatgctgtcgaaatttgtggcttctaccttgatattttatccctgtaannn |
125 |
Q |
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| T |
10211910 |
ctagtaattttgcatgttaacaatggccaggacaaaagagggtattc----tgctgtcgaaatttgtggcttctaccttgatattttatctctgaaa--t |
10211817 |
T |
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| Q |
126 |
nnnnnctgtttcc-ttgtcattttagaaatgaga---------------tttttatatgctgcggtttgaaaatcataatcaaatcaccaaatagatgtg |
209 |
Q |
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| T |
10211816 |
ttttcctgtttcctttgtcattttagaaatgagaaaataagagtgagatttcttttatgctgtggtttgaaaatcataatcaaatcaccaaattaatgtg |
10211717 |
T |
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| Q |
210 |
actttacccaaatgggatagtat |
232 |
Q |
| |
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| || || ||||||||||||||| |
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| T |
10211716 |
atttgacacaaatgggatagtat |
10211694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 10215674 - 10215601
Alignment:
| Q |
2 |
tgcaatgccatgttattcttggcgctagtcattttgtatgttaacaatggccaggacaaaagagggtattctgc |
75 |
Q |
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|||||| | |||||| ||||||| |||||||||| | ||||||||||||| || ||||||| |||||||||||| |
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| T |
10215674 |
tgcaatacaatgttactcttggcactagtcatttcgcatgttaacaatggacatgacaaaatagggtattctgc |
10215601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 10104397 - 10104445
Alignment:
| Q |
74 |
gcatgctgtcgaaatttgtggcttctaccttgatattttatccctgtaa |
122 |
Q |
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| T |
10104397 |
gcatgctgtcaaaatttgtggcttctagcttggtattttatccctgtaa |
10104445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 9685260 - 9685217
Alignment:
| Q |
68 |
tattctgcatgctgtcgaaatttgtggcttctaccttgatattt |
111 |
Q |
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| T |
9685260 |
tattctgcatgctgttgaaatttgtggcttctagcttgttattt |
9685217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 10104504 - 10104554
Alignment:
| Q |
176 |
ttgaaaatcataatcaaatcaccaaatagatgtgactttacccaaatggga |
226 |
Q |
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| T |
10104504 |
ttgaaaatcataatcaaatcacgaagcagatgtgattttacacaaatggga |
10104554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 9685171 - 9685114
Alignment:
| Q |
175 |
tttgaaaatcataatcaaatcaccaaatagatgtgactttacccaaatgggatagtat |
232 |
Q |
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| T |
9685171 |
tttgaaaatcataatcagatcccctaaccgatgtgattttacacaaatgggatagtat |
9685114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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