View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_high_46 (Length: 238)

Name: NF10265_high_46
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_high_46
NF10265_high_46
[»] chr2 (12 HSPs)
chr2 (1-225)||(16118849-16119066)
chr2 (3-225)||(16340597-16340812)
chr2 (6-80)||(43978174-43978248)
chr2 (6-73)||(43977543-43977610)
chr2 (6-89)||(7736721-7736803)
chr2 (4-78)||(16119146-16119220)
chr2 (4-78)||(16339868-16339942)
chr2 (6-78)||(17913058-17913130)
chr2 (13-89)||(40055312-40055387)
chr2 (6-49)||(432069-432112)
chr2 (14-89)||(36255777-36255852)
chr2 (42-80)||(41565295-41565333)
[»] chr1 (10 HSPs)
chr1 (3-86)||(10974774-10974857)
chr1 (9-80)||(15660285-15660356)
chr1 (6-80)||(33205427-33205501)
chr1 (6-80)||(52427549-52427623)
chr1 (6-80)||(21263312-21263386)
chr1 (33-91)||(26354556-26354614)
chr1 (6-80)||(26945270-26945343)
chr1 (42-80)||(6562958-6562996)
chr1 (34-80)||(24362233-24362279)
chr1 (9-62)||(12870838-12870891)
[»] chr5 (6 HSPs)
chr5 (6-89)||(18848068-18848151)
chr5 (3-80)||(9070446-9070523)
chr5 (6-80)||(35776656-35776731)
chr5 (44-80)||(34545180-34545216)
chr5 (42-78)||(34545735-34545771)
chr5 (34-75)||(29413362-29413403)
[»] chr7 (11 HSPs)
chr7 (6-91)||(31873333-31873418)
chr7 (6-91)||(35200817-35200902)
chr7 (6-80)||(4997883-4997957)
chr7 (6-80)||(35200205-35200279)
chr7 (6-86)||(19804653-19804733)
chr7 (6-80)||(4997298-4997372)
chr7 (9-90)||(31873880-31873960)
chr7 (5-89)||(21582677-21582762)
chr7 (42-87)||(38857040-38857085)
chr7 (42-89)||(38858014-38858061)
chr7 (43-88)||(43003940-43003985)
[»] chr3 (16 HSPs)
chr3 (8-79)||(20393674-20393745)
chr3 (6-89)||(36346304-36346387)
chr3 (6-80)||(3350069-3350143)
chr3 (6-91)||(3349423-3349508)
chr3 (9-80)||(33304150-33304221)
chr3 (6-73)||(54203451-54203518)
chr3 (33-86)||(36346493-36346546)
chr3 (177-225)||(36000243-36000291)
chr3 (9-60)||(21128177-21128228)
chr3 (4-79)||(52087606-52087680)
chr3 (6-78)||(20395479-20395551)
chr3 (8-75)||(50122330-50122397)
chr3 (9-90)||(34209478-34209559)
chr3 (42-90)||(34712166-34712214)
chr3 (12-80)||(41755089-41755157)
chr3 (6-66)||(44685821-44685880)
[»] scaffold0153 (2 HSPs)
scaffold0153 (6-80)||(16836-16910)
scaffold0153 (8-80)||(17421-17493)
[»] chr4 (6 HSPs)
chr4 (9-80)||(30836634-30836705)
chr4 (33-87)||(30837209-30837263)
chr4 (4-81)||(31689074-31689149)
chr4 (177-224)||(12898867-12898914)
chr4 (6-80)||(53777110-53777184)
chr4 (7-80)||(26791592-26791664)
[»] scaffold0206 (1 HSPs)
scaffold0206 (6-80)||(11543-11617)
[»] scaffold0181 (1 HSPs)
scaffold0181 (8-90)||(21024-21105)
[»] chr6 (2 HSPs)
chr6 (6-80)||(19757919-19757993)
chr6 (9-89)||(8193268-8193348)
[»] chr8 (6 HSPs)
chr8 (16-75)||(203851-203910)
chr8 (16-75)||(318688-318747)
chr8 (9-86)||(27411609-27411685)
chr8 (33-86)||(40039064-40039117)
chr8 (42-86)||(32383270-32383314)
chr8 (42-86)||(32437225-32437269)
[»] scaffold0341 (1 HSPs)
scaffold0341 (42-80)||(18148-18186)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16119066 - 16118849
Alignment:
Q  1 ttcttacttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttctagcttgatgg 100  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  16119066 ttcttacttcggtagttaaccgttgcaggggcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacagcaattttctagcctgatgg 16118967  T
Q  101 agtgaattggtaacataatgttgtatgaatgtaataaattcacccattcaatatttacagacattacctttgtagtttgtagaaatcttcctaattttat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||    
T  16118966 agtgaattggtaacataaagttgtatgaatgtaataaattcaccctttcaatatttacagacattaccttt-------gtagaaatcttcctaattttat 16118874  T
Q  201 tcagttattttgtatcttgtttttg 225  Q
    |||||||||||||||||||||||||    
T  16118873 tcagttattttgtatcttgtttttg 16118849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 16340597 - 16340812
Alignment:
Q  3 cttacttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttctagcttgatggag 102  Q
    |||||||||||||||||||| ||||||  ||||||| || ||||||||| ||||||| |||||||||||| |||||||  ||||||||||||||||||||    
T  16340597 cttacttcggtagttaactgccgcaggaacattttcatcttttacatgtatttttcaaccctatcatatgcgtcaacagcaattttctagcttgatggag 16340696  T
Q  103 tgaattggtaacataatgttgtatgaatgtaataaattcacccattcaatatttacagacattacctttgtagtttgtagaaatcttcctaattttattc 202  Q
    |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  16340697 tgaattggtaacataaagttgtatgcatgtaataaattcaccctttcaatatttacagacattacc-------tttgtagaaatcttcctaattttattc 16340789  T
Q  203 agttattttgtatcttgtttttg 225  Q
    |||||||||||||||||||||||    
T  16340790 agttattttgtatcttgtttttg 16340812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 43978174 - 43978248
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  43978174 acttcggtagttaactaccgcaggggcattttcgtcttttacatgtgtttttcagccctatcatatgtgtaaaca 43978248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 43977610 - 43977543
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgt 73  Q
    ||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  43977610 acttcggtagttagctgccgcaggggcattttcgtcttttacatgtgtttttcagctctatcatatgt 43977543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 7736803 - 7736721
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttc 89  Q
    |||||| ||||||||||  || ||| |||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  7736803 acttcgatagttaactgctgc-gggacatttttgtcttttacatgtgtttttcagccctatcatatgtgtaaacaacaattttc 7736721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 16119146 - 16119220
Alignment:
Q  4 ttacttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaa 78  Q
    ||||||||||||| |||||   || || |||||||||| ||||||| ||||||| ||| ||||||||||||||||    
T  16119146 ttacttcggtagtaaactgctacatgggcattttcgtcttttacatatgttttttagctctatcatatgtgtcaa 16119220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 16339942 - 16339868
Alignment:
Q  4 ttacttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaa 78  Q
    ||||||||||||| || ||  ||| || |||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  16339942 ttacttcggtagtaaattgctgcatgggcattttcgttttttacatatgtttttcagctctatcatatgtgtcaa 16339868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 17913058 - 17913130
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaa 78  Q
    |||||||||||||||||  ||| |   ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  17913058 acttcggtagttaactgctgcaagagtattttcgttttttatatgtgtttttcagccctatcaaatgtgtcaa 17913130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 40055387 - 40055312
Alignment:
Q  13 tagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttc 89  Q
    |||||||||||||  |||| |||| |||| ||||||||||||| |||||| |  ||||||||||||||| |||||||    
T  40055387 tagttaactgtcgaggggtaattt-cgtcttttacatgtgtttatcagcctttgcatatgtgtcaacaacaattttc 40055312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 432112 - 432069
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacat 49  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||    
T  432112 acttcggtagttaactgtcgcaggggcatttttgtcttttacat 432069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 36255777 - 36255852
Alignment:
Q  14 agttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttc 89  Q
    ||||||||| |||||||  |||| |||| |||||  |||||| |||||| | |||||||||||||||| |||||||    
T  36255777 agttaactgccgcaggggaatttacgtcttttactggtgtttctcagccttctcatatgtgtcaacaacaattttc 36255852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 41565333 - 41565295
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  41565333 atttacatgtgtttttcagccctattaaatgtgtcaaca 41565295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 10974774 - 10974857
Alignment:
Q  3 cttacttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaatt 86  Q
    |||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  10974774 cttacttcagtagttaactgtcgcagaggcattttcgtcttttatatgtgtttttcagccctatcatatgtgtcaacaacaatt 10974857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 15660285 - 15660356
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||||||||||| |||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15660285 tcggtagttaactgccgcatgagcattttcgtcatttatatgtgtttttcagccctatcatatgtgtcaaca 15660356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 33205501 - 33205427
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  33205501 acttcggtaggtaactgccgcagaggcattttcgtcttttacatgtgtttttcagccctatcatatgtgtaaaca 33205427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 52427549 - 52427623
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||||||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  52427549 acttcggtagttaactgtagcagaggcattttcgtcttttacatgtgtttttcagtcctatcatatatgtcaaca 52427623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 21263386 - 21263312
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||| |||||||  |||||| || ||||||||||||||||||||||||||||| ||| ||||    
T  21263386 acttcggtagttaactgccgcaggggtattttcatcttttacatgtgtttttcagccctatcatatatgtaaaca 21263312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 26354556 - 26354614
Alignment:
Q  33 attttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttcta 91  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||||  |||||||||    
T  26354556 attttcgtcttttacatatgtttttcagccctatcatatgagtcaacatcaattttcta 26354614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 26945270 - 26945343
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||| |||| ||  ||||||||| |||| |||||||||| || |||||||||||||| ||||    
T  26945270 acttcggtagttaactgccgcatggatattttcgtcttttatatgtgtttttgag-cctatcatatgtgtaaaca 26945343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 6562958 - 6562996
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  6562958 atttacatgtgtttttcaaccctatcaaatgtgtcaaca 6562996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 24362279 - 24362233
Alignment:
Q  34 ttttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||||| |||||||||||||||||||||||| | |||||| ||||    
T  24362279 ttttcgtcttttacatgtgtttttcagccctattaaatgtgtgaaca 24362233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 12870891 - 12870838
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagcc 62  Q
    |||||||||||||  || ||||||||||| ||||||||||  ||||||||||||    
T  12870891 tcggtagttaactaccgaagggtcattttggtcatttacagatgtttttcagcc 12870838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 18848068 - 18848151
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttc 89  Q
    |||||||||||||| |   |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  18848068 acttcggtagttaattactgcaggggcattttcgtcttttacatgtgtttttcagccctatcatatgtgtcaacaataattttc 18848151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 9070446 - 9070523
Alignment:
Q  3 cttacttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||||||||||||||||| ||||||   ||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  9070446 cttacttcggtagttaactgccgcaggaatattttcgtcttttacatgtatttttcagtcctatcatatgtgtcaaca 9070523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 35776731 - 35776656
Alignment:
Q  6 acttcggtagttaactgtcgcagggt-cattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||| |||||||||| |||||||  |||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  35776731 acttcgatagttaactgccgcagggggcattttcgtcttttacatatgtttttcagccctatcatatgtgtaaaca 35776656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 34545216 - 34545180
Alignment:
Q  44 ttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34545216 ttacatgtgtttttcagccctatcaaatgtgtcaaca 34545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 34545735 - 34545771
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaa 78  Q
    ||||||||||||||||||||||||||| |||||||||    
T  34545735 atttacatgtgtttttcagccctatcaaatgtgtcaa 34545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 29413362 - 29413403
Alignment:
Q  34 ttttcgtcatttacatgtgtttttcagccctatcatatgtgt 75  Q
    |||||| | ||||||||||||||||||||||||| |||||||    
T  29413362 ttttcgccttttacatgtgtttttcagccctatcgtatgtgt 29413403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 31873418 - 31873333
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttcta 91  Q
    ||||||||||||||||| ||||||  ||||||| || |||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  31873418 acttcggtagttaactgccgcaggagcattttcatcttttacatgtgtttttcagccttatcatatgtgtcaacaacaattctcta 31873333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 35200817 - 35200902
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttcta 91  Q
    |||||||||| |||||| ||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  35200817 acttcggtagctaactgccgcaggggcattttcatcttttacatgtgtttttcagccctatcatatgtgtaaacaacaattctcta 35200902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 4997883 - 4997957
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||| ||  ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  4997883 acttcggtagttagctaccgcaggggcattttcgtcttttacatgtgtttttcagccctatcatatgtgtaaaca 4997957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 35200279 - 35200205
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||  ||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  35200279 acttcggtagttaactaccgcagaggcattttcgtcttttacatgtgtttttcagccctatcatatgtgtaaaca 35200205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 19804653 - 19804733
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaatt 86  Q
    |||||||||||||| ||||||| |  |||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||    
T  19804653 acttcggtagttaattgtcgcatgagcattttcgtcttttacatgtgtttttcagtcctatcacatgtgtcaacaacaatt 19804733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 4997372 - 4997298
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||| || ||||  ||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  4997372 acttcggtagttaactgccgtaggggtattttcgtcttttacatgtgtttttcaaccctatcatatgtgtaaaca 4997298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 31873880 - 31873960
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttct 90  Q
    |||||||||||||| || || |  ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||    
T  31873880 tcggtagttaactgccgtagaggtattttcgtcttttacatgtgtttt-cagccctatcatatgtgtcaacaacaattttct 31873960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 21582677 - 21582762
Alignment:
Q  5 tacttcggtagttaactgtcgcagggtcatttt-cgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttc 89  Q
    ||||||||||||||| ||| |||||   ||||| |||| ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  21582677 tacttcggtagttaattgttgcaggagaatttttcgtcttttacatgtgtttttcagccctaacatatgtgtcaacagcaattttc 21582762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 38857085 - 38857040
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaacaagaattt 87  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||    
T  38857085 atttacatgtgtttttcagccctatcaaatgtgtcaacaacaattt 38857040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 38858014 - 38858061
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaacaagaattttc 89  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||    
T  38858014 atttacatgtgtttttcagccctatcaaatgtgtcaacatcaattttc 38858061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 43003985 - 43003940
Alignment:
Q  43 tttacatgtgtttttcagccctatcatatgtgtcaacaagaatttt 88  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||||    
T  43003985 tttacatgtgtttttcagccttctcaaatgtgtcaacaataatttt 43003940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 20393745 - 20393674
Alignment:
Q  8 ttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaac 79  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||||| | |||||||||||||||||||    
T  20393745 ttcggtagttaactgtcgcagaggcattttcgtcttttacatgtgttttttaaccctatcatatgtgtcaac 20393674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 36346387 - 36346304
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttc 89  Q
    ||||||||||||||||| ||||||| | |||||||| |||| ||||||||||||||||||| |||||||||||||  |||||||    
T  36346387 acttcggtagttaactgccgcagggactttttcgtcttttatatgtgtttttcagccctattatatgtgtcaacagcaattttc 36346304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 3350069 - 3350143
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||   |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  3350069 acttcggtagttaactactgcaggggcattttcgtcttttacatgtgtttttcagccctatcatatgtgtaaaca 3350143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 3349508 - 3349423
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttcta 91  Q
    ||||||||||||| ||| ||||| | |||||||||| ||||||||||||||||| ||||||||||| ||| ||||| |||| ||||    
T  3349508 acttcggtagttagctgccgcagaggcattttcgtcttttacatgtgtttttcaaccctatcatatatgtaaacaacaattctcta 3349423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 33304221 - 33304150
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||| ||||||||| ||||||  |||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  33304221 tcggcagttaactgccgcaggagcatttttgtcttttacatgtgtttttcagccctatcatatgtgtaaaca 33304150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 54203518 - 54203451
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgt 73  Q
    |||| ||||||||| || ||||||| |||||||||| |||||| || |||||||||||||||||||||    
T  54203518 actttggtagttaattgccgcagggacattttcgtcttttacacgtatttttcagccctatcatatgt 54203451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 36346493 - 36346546
Alignment:
Q  33 attttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaatt 86  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||    
T  36346493 attttcgtcttttacatgtgtttttcaaccctataatatgtgtcaacaataatt 36346546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 36000291 - 36000243
Alignment:
Q  177 ttgtagaaatcttcctaattttattcagttattttgtatcttgtttttg 225  Q
    |||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  36000291 ttgtagaaatcttcctaattttattcagttcttttgtgtcttgcttttg 36000243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 21128228 - 21128177
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcag 60  Q
    |||| ||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  21128228 tcggcagttaactgccgcagggacattttcgtcttttacatgtgtttttcag 21128177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 52087680 - 52087606
Alignment:
Q  4 ttacttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaac 79  Q
    ||||||||||||||||||||||  |||  ||||||||| ||||||| |||||||||| ||||||| || |||||||    
T  52087680 ttacttcggtagttaactgtcgagggggtattttcgtcttttacatatgtttttcag-cctatcaaatatgtcaac 52087606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 20395479 - 20395551
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaa 78  Q
    |||||| || |||| ||||||| |  |||||||||| ||||||| | ||||||||||||||||||| ||||||    
T  20395479 acttcgatatttaattgtcgcatgagcattttcgtcttttacatatctttttcagccctatcatatatgtcaa 20395551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 50122397 - 50122330
Alignment:
Q  8 ttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgt 75  Q
    ||||||||||||||||| | | | |||||||||| ||||| |||||||||||||| ||| | ||||||    
T  50122397 ttcggtagttaactgtcacggtggcattttcgtcttttacttgtgtttttcagccttataacatgtgt 50122330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 34209478 - 34209559
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttct 90  Q
    |||| |||||||| |||||||| ||||| |||| |||||  |||||| | |||| | |||||||||||||||  ||||||||    
T  34209478 tcggcagttaactatcgcaggggcatttacgtcttttactggtgtttctaagccttctcatatgtgtcaacatcaattttct 34209559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 34712214 - 34712166
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaacaagaattttct 90  Q
    |||||||||||||| |||||||||| | ||||||| |||| ||||||||    
T  34712214 atttacatgtgtttctcagccctatgaaatgtgtcgacaacaattttct 34712166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 41755089 - 41755157
Alignment:
Q  12 gtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||  ||| |||||||||| |||||  |||||| |||||| ||| | |||||||||||    
T  41755089 gtagttaactgtcgaggggacattttcgtcttttactggtgtttctcagccttataacatgtgtcaaca 41755157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 44685880 - 44685821
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctat 66  Q
    ||||||||||| |||||||  |||  |||||||||| |||| |||||||||||||||||||    
T  44685880 acttcggtagt-aactgtcataggagcattttcgtcttttatatgtgtttttcagccctat 44685821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 16910 - 16836
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||  ||||||| |||||||||| ||||||||||||||||||||| | ||||||||| ||||    
T  16910 acttcggtagttaactaccgcaggggcattttcgtcttttacatgtgtttttcagcccaagcatatgtgtaaaca 16836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 17421 - 17493
Alignment:
Q  8 ttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||| ||  |||||||||||||| |||||  |||||| |||||| ||| | |||||| ||||    
T  17421 ttcggtagttaactgccgaggggtcattttcgtcttttactagtgtttctcagccttataacatgtgtaaaca 17493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 30836705 - 30836634
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||| |||||||||||| |  | |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  30836705 tcggcagttaactgtcgaaatgacattttcgtcttttacatgtgtttttcagccctatcatacgtgtcaaca 30836634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 30837209 - 30837263
Alignment:
Q  33 attttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattt 87  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||||    
T  30837209 attttcgtcttttacatgtgtttttcagctctatcatatgtgttaacaacaattt 30837263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 31689074 - 31689149
Alignment:
Q  4 ttacttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaa 81  Q
    ||||||||||||||||||| |||| |  |||||||||| |||||||||||||| ||| ||||||  ||||||||||||    
T  31689074 ttacttcggtagttaactgccgcatgtgcattttcgtcttttacatgtgttttccagtcctatc--atgtgtcaacaa 31689149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 12898867 - 12898914
Alignment:
Q  177 ttgtagaaatcttcctaattttattcagttattttgtatcttgttttt 224  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  12898867 ttgtagaaatcttcctaattttattcagttcttttgtgtcttgatttt 12898914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 53777184 - 53777110
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    ||||||||||||||||| ||||||| |||||||||| |||||  |||||| |||||| ||| | |||||| ||||    
T  53777184 acttcggtagttaactgccgcaggggcattttcgtcttttactagtgtttctcagccttataacatgtgtaaaca 53777110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 26791664 - 26791592
Alignment:
Q  7 cttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||| ||||||||  || ||||| ||||||||| ||||||||||||| |||||| | |||||||||| ||||    
T  26791664 cttcggcagttaactaccgaagggt-attttcgtcttttacatgtgtttctcagccttctcatatgtgtaaaca 26791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 11617 - 11543
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||| |||||||||| ||||||  |||||||||| ||||||| ||||||||||||||||||||| ||| ||||    
T  11617 acttcgatagttaactgccgcaggagcattttcgtcttttacatatgtttttcagccctatcatatatgtaaaca 11543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 21105 - 21024
Alignment:
Q  8 ttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttct 90  Q
    ||||| ||||||||| ||| ||| ||||| ||||||||||||||||||||||||| | ||| |||||||||||| ||||||||    
T  21105 ttcggcagttaactgccgccggggcattt-cgtcatttacatgtgtttttcagccttctcaaatgtgtcaacaacaattttct 21024  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 19757919 - 19757993
Alignment:
Q  6 acttcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||||||||||||||  |||||   ||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  19757919 acttcggtagttaactgctgcaggagtattttcgtcttttatatgtatttttcagccctatcatatgtgtcaaca 19757993  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 8193268 - 8193348
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaattttc 89  Q
    |||| |||||||||  |||||| ||||| |||| |||||  |||||| ||| || | |||||||||||||||| |||||||    
T  8193268 tcggcagttaactgctgcaggggcatttacgtcttttactggtgtttctcaaccttctcatatgtgtcaacaacaattttc 8193348  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 203910 - 203851
Alignment:
Q  16 ttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgt 75  Q
    |||||||  |||||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  203910 ttaactgctgcagggacattttcgtcttttatatgtgtttttcagccctatcatatgtgt 203851  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 318747 - 318688
Alignment:
Q  16 ttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgt 75  Q
    |||||||  |||||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  318747 ttaactgctgcagggacattttcgtcttttatatgtgtttttcagccctatcatatgtgt 318688  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 27411685 - 27411609
Alignment:
Q  9 tcggtagttaactgtcgcagggtcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaatt 86  Q
    |||||||||||||||||  |||| ||||||||| ||||||||||||| ||||||  | || |||||||||||| ||||    
T  27411685 tcggtagttaactgtcgaggggt-attttcgtcttttacatgtgtttctcagccaaaccaaatgtgtcaacaacaatt 27411609  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 40039117 - 40039064
Alignment:
Q  33 attttcgtcatttacatgtgtttttcagccctatcatatgtgtcaacaagaatt 86  Q
    ||||||||| |||||||||||||||||||| |  ||||||||||||||| ||||    
T  40039117 attttcgtcttttacatgtgtttttcagcctttgcatatgtgtcaacaacaatt 40039064  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 32383270 - 32383314
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaacaagaatt 86  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||    
T  32383270 atttacatgtgtttttcagccctatcaaaagtgtcaacaacaatt 32383314  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 32437225 - 32437269
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaacaagaatt 86  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||    
T  32437225 atttacatgtgtttttcagccctatcaaaagtgtcaacaacaatt 32437269  T

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Target: scaffold0341 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 18148 - 18186
Alignment:
Q  42 atttacatgtgtttttcagccctatcatatgtgtcaaca 80  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  18148 atttacatgtgtttttcaaccctatcaaatgtgtcaaca 18186  T

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