View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_high_47 (Length: 235)

Name: NF10265_high_47
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_high_47
NF10265_high_47
[»] chr5 (12 HSPs)
chr5 (20-221)||(30243845-30244046)
chr5 (25-225)||(30434258-30434458)
chr5 (147-225)||(30340006-30340084)
chr5 (147-225)||(30748201-30748279)
chr5 (147-225)||(30058855-30058933)
chr5 (147-225)||(29870744-29870822)
chr5 (147-225)||(30481890-30481968)
chr5 (151-225)||(30714553-30714627)
chr5 (147-225)||(30678709-30678788)
chr5 (151-225)||(29851863-29851938)
chr5 (147-213)||(30058596-30058667)
chr5 (63-140)||(40661590-40661667)
[»] chr7 (1 HSPs)
chr7 (147-221)||(26705819-26705893)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 30244046 - 30243845
Alignment:
Q  20 atgcgttcaaaagaactcaaaagaaaagcctgcaaatcatcctataatgagaatatataacgatttttgaataaaattcgagtaaattaatcacttaaaa 119  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30244046 atgcgttcaaaagaactcaacagaaaagcctgcaaatcatcctataatgagaatatataacgattttttaataaaattcgagtaaattaatcacttaaaa 30243947  T
Q  120 gccaaacaaaagaagggtgtattttagggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctct 219  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30243946 tccaaacataagaagggtgtattttagggggaaatagagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataagggtaaacgtctct 30243847  T
Q  220 gc 221  Q
    ||    
T  30243846 gc 30243845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 30434258 - 30434458
Alignment:
Q  25 ttcaaaagaactcaaaagaaaagcctgcaaatcatcctataatgagaatatataacgatttttgaataaaattcgagtaaattaatcacttaaaagccaa 124  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  30434258 ttcaaaagaactcaacagaaaagcctgcaaatcatcctataatgagaatatataacgatttttgaataaaattcgagtcaattaatcacttaaaatccaa 30434357  T
Q  125 acaaaagaagggtgtattttagggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  30434358 acaaaagaagggtgtattttagggggaaatagagatcctaccagtaaaatagatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttc 30434457  T
Q  225 t 225  Q
    |    
T  30434458 t 30434458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 30340084 - 30340006
Alignment:
Q  147 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttct 225  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340084 ggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttct 30340006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 30748201 - 30748279
Alignment:
Q  147 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttct 225  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30748201 ggggaaatagagatcttaccagtaaaattgaattttgcgattgtgattgaggcagataagggtaaacgtctctgcttct 30748279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 30058855 - 30058933
Alignment:
Q  147 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttct 225  Q
    |||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||    
T  30058855 ggggaaattgagatcctaccagtaaaattgatttttgcgatggttaatgaggcagataagggtaaacgtctctgcttct 30058933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 29870744 - 29870822
Alignment:
Q  147 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttct 225  Q
    |||||||| |||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  29870744 ggggaaattgagatcctacaagtaaaattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttct 29870822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 30481890 - 30481968
Alignment:
Q  147 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttct 225  Q
    |||||||| |||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  30481890 ggggaaattgagatcttaccagtaaaattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttct 30481968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 30714627 - 30714553
Alignment:
Q  151 aaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttct 225  Q
    ||||||||||||||||||||||||||| ||||| |||||  | ||||||||||||||||||||||||||||||||    
T  30714627 aaatagagatcctaccagtaaaattgatttttgtgatggctaatgaggcagataagggtaaacgtctctgcttct 30714553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 30678788 - 30678709
Alignment:
Q  147 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagat-aagggtaaacgtctctgcttct 225  Q
    |||||||| |||||||||||||||||||  | |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  30678788 ggggaaattgagatcctaccagtaaaatatatttttgcgatggtgattaaggcagataaagggtaaacgtctctgcttct 30678709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 29851863 - 29851938
Alignment:
Q  151 aaatagagatcctaccagtaaaattgaattttgcgatggtgattgagg-cagataagggtaaacgtctctgcttct 225  Q
    ||||||||| |||||||||||||| ||  ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  29851863 aaatagagagcctaccagtaaaatagatctttgcgatggtgattgaggccagataagggtaaatgtctctgcttct 29851938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 30058596 - 30058667
Alignment:
Q  147 ggggaaatagagatcctaccagtaaa----attgaattttgcgatggtgattgagg-cagataagggtaaac 213  Q
    ||||||||||||||| ||||||| ||    ||||||||||||||||||||| |||| |||||||||||||||    
T  30058596 ggggaaatagagatcttaccagttaagtgaattgaattttgcgatggtgatcgaggccagataagggtaaac 30058667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 40661590 - 40661667
Alignment:
Q  63 ataatgagaatatataacgatttttgaataaaattcgagtaaattaatcacttaaaagccaaacaaaagaagggtgta 140  Q
    |||||||||||||| ||| |||||||||||||| || ||| |||| | ||||| ||| ||||||| || |||||||||    
T  40661590 ataatgagaatatacaacaatttttgaataaaaatccagtcaattgagcacttgaaatccaaacacaaaaagggtgta 40661667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 26705819 - 26705893
Alignment:
Q  147 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgc 221  Q
    ||||||| ||||||| ||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  26705819 ggggaaacagagatcgtaccactaaaatagatttttgtgatggtgattgaggcagataagggtaaacgtctctgc 26705893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University