View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_5 (Length: 503)
Name: NF10265_high_5
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_5 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 7e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 353 - 503
Target Start/End: Original strand, 13854693 - 13854843
Alignment:
| Q |
353 |
tatgcctttgttttatttctgtataatatctttaggctaatgtattattctttgaaaggatagcataacttcatagaccaatgctgacttgatttatgga |
452 |
Q |
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| T |
13854693 |
tatgcctttgttttatttctgtataatatctttaggctaatgtattagtctttgaaatgatagcataacttcatagaccaatgctgacttgatttatgga |
13854792 |
T |
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| Q |
453 |
tgacaatgatttgttatttgataatcagtaacgttccggagatagtagttt |
503 |
Q |
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| T |
13854793 |
tgacaatgatttgttatttgataatcagtaacgttccggagatagtagttt |
13854843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 415 - 503
Target Start/End: Complemental strand, 10215764 - 10215676
Alignment:
| Q |
415 |
gcataacttcatagaccaatgctgacttgatttatggatgacaatgatttgttatttgataatcagtaacgttccggagatagtagttt |
503 |
Q |
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| T |
10215764 |
gcataacttcatagacctatgttgacttgatttattgataataatgattagttatatgataatcagtaacattctggagatagtggttt |
10215676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 455
Target Start/End: Original strand, 10107690 - 10107785
Alignment:
| Q |
359 |
tttgttttatttctgtataatatctttaggctaatgtattattctttgaaaggatagcataacttcatagaccaatgctgacttgatttatggatga |
455 |
Q |
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| T |
10107690 |
tttgtttcatttccgtataatttgtttatgctaatgtattagtctt-gagatgattgcataatttcatagaccattgttgacttgatttatagatga |
10107785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 10104234 - 10104305
Alignment:
| Q |
383 |
tttaggctaatgtattattctttgaaaggatagcataacttcatagaccaatgctgacttgatttatggatga |
455 |
Q |
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| T |
10104234 |
tttatgctaatgtattagtctt-gagatgattgcataatttcatagaccattgttgacttgatttatagatga |
10104305 |
T |
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