View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_high_7 (Length: 480)
Name: NF10265_high_7
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_high_7 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 73287 - 73756
Alignment:
| Q |
1 |
acggacaccagacatatcagagacaccgatatgtcaactcaaataataacatgaaaaaatgacataattcaaatcacatgtgtcagtgtcatg------- |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73287 |
acggacaccagacatatcagagacaccgatatgtcaactcaaataataacatgaaaaaatgacataattcaaatcacatgtgtcagtgtcatgtcaaaca |
73386 |
T |
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| Q |
94 |
--tcaaacactgatacgtgccagagactggacacgccttcgatcagatagcgtgatagagaacaaatataaaacaataaaattaagactcacttatgaga |
191 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
73387 |
tgtcaaacactgacacgtgccagagactggacacgccttcgatcagatagcgtgatagagaaaaaatataagacaataaaattaagactcacttatgaga |
73486 |
T |
|
| Q |
192 |
tgatgaaagagatgatcattaacaaacttagaagcttcaggaccaccatgaccatcataaacaccaacaaaaacagcatcagaaccagtttcaacttgac |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73487 |
tgatgaaagagatgatcattaacaaacttagaagcttcaggaccaccatgaccatcataaacaccaacaaaaacagcatcagaaccagtttcaacttgac |
73586 |
T |
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| Q |
292 |
tatgatcttcaattacttcattagcttgaacaacagcaaaggaaaattcaccacaagaatgtttctcaaggtctttacaccaaacaagagcatcttcaga |
391 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
73587 |
tatgatcctcaattacttcattagcttgaacaatagcaaaggagaattcaccacaagagtgtttctcaaggtctttacaccaaacaagagcatcttcaga |
73686 |
T |
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| Q |
392 |
agttgatgactcatcagaatcattttcattgtctttgttcatacgtgcatagcgtcgaactggtctcaag |
461 |
Q |
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| T |
73687 |
tgttgatgactcatcagaatcattttcattgtctttgttcatacgtgcatagcgtcgaactggtctcaag |
73756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 263
Target Start/End: Original strand, 31682187 - 31682222
Alignment:
| Q |
228 |
tcaggaccaccatgaccatcataaacaccaacaaaa |
263 |
Q |
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| T |
31682187 |
tcaggaccaccatgaccatcataaacaccaacaaaa |
31682222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 40327300 - 40327349
Alignment:
| Q |
207 |
tcattaacaaacttagaagcttcaggaccaccatgaccatcataaacacc |
256 |
Q |
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| T |
40327300 |
tcattaacaaactgagaagctgcagttccaccatgaccatcataaacacc |
40327349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 48356629 - 48356593
Alignment:
| Q |
220 |
tagaagcttcaggaccaccatgaccatcataaacacc |
256 |
Q |
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| T |
48356629 |
tagaagcttcaggaccaccatgaccgtcataaacacc |
48356593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 28939727 - 28939769
Alignment:
| Q |
221 |
agaagcttcaggaccaccatgaccatcataaacaccaacaaaa |
263 |
Q |
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| T |
28939727 |
agaagcttcagctccaccatgaccatcataaacaccaataaaa |
28939769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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