View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_11 (Length: 430)
Name: NF10265_low_11
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Complemental strand, 36956757 - 36956337
Alignment:
| Q |
11 |
agcagagaatacagagtaaagctcaatttatggatatcatacacataactgatcaaacctacgctgctcagctccaaaaatagacatataacaaaagcaa |
110 |
Q |
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| T |
36956757 |
agcagagaatacagagtaaagctcaatttatggatatcatacacataactgatcaaacctacgctgctcagctccagaaatagacatataacaaaagcaa |
36956658 |
T |
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| Q |
111 |
atttcgctcatcaattaatatatgcaaaaacaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcattatgtaaaatatcacaaa |
210 |
Q |
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| T |
36956657 |
atttcgctcatcaattaatatatgcaaaaacaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcattatgtaaaatatcacaaa |
36956558 |
T |
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| Q |
211 |
aacaaattattgatcaacaaaagatattaagacaacacattacaattctatcatctaaaataagcaattaggcaaacaaaaaatcaaatcatctattcca |
310 |
Q |
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| T |
36956557 |
aacaaattgttgatcaacaaaagatattaagacaacacattacaattctatcatctaaaataagcaattaggcaaacaaaaaatcaaatcatctattcca |
36956458 |
T |
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| Q |
311 |
ttttgtgatcatcaacaaatctttcaaaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaa-aaaatagt |
409 |
Q |
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| T |
36956457 |
ttttgtgatcatcaaaaaatctttcaaaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaaaaaaatagt |
36956358 |
T |
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| Q |
410 |
aaatcatatcataccaataca |
430 |
Q |
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| T |
36956357 |
aaatcatatcatacaaataca |
36956337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 36971093 - 36970682
Alignment:
| Q |
11 |
agcagagaatacagagtaaagctcaatttatggatatcatacacataactgatcaaacctacgctgctcag-ctccaaaaatagacatataacaaaagca |
109 |
Q |
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|||| |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||| | |
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| T |
36971093 |
agcaaagaatacagagtaaagatcaatttatggatatcatgcacataaccgatcaaacctacactgctcaggctccagaaatagacatataacaaaagaa |
36970994 |
T |
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| Q |
110 |
aatttcgctcatcaattaatatatgcaaaaacaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcatt-atgtaaaatatcaca |
208 |
Q |
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| T |
36970993 |
aatttcgctcatcgattaatatatgcaaaaacaaaacaaaataggtcaaattactataacaccacagacaattaagaatgcattcatgtaaaatatcaca |
36970894 |
T |
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| Q |
209 |
aaaacaaattattgatcaacaaaagatattaagacaacacattacaattctatcatctaaaataagcaattagg-caaacaaaaaatcaaatcatctatt |
307 |
Q |
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||| ||||| ||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || |
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| T |
36970893 |
aaa--aaattgttgatcaacaaaagaaattaggacaacacattccaattctatcatttaaaataagcaattaggccaaaaaaaaaatcaaatcatctctt |
36970796 |
T |
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| Q |
308 |
ccattttgtgatcatcaacaaatctttcaaaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaaaaaata |
407 |
Q |
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||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
36970795 |
ccattttatgatcatcaactaatcatgcaaaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtc--aactaaata |
36970698 |
T |
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| Q |
408 |
gtaaatcatatcatac |
423 |
Q |
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| T |
36970697 |
gtaaatcatatcatac |
36970682 |
T |
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