View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10265_low_14 (Length: 402)
Name: NF10265_low_14
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 1044071 - 1044443
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1044071 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctttggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
1044170 |
T |
|
| Q |
112 |
gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgctctcaataagtacaatattcttta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1044171 |
gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattcttta |
1044270 |
T |
|
| Q |
212 |
ctgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1044271 |
ctgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggctctttcatg |
1044370 |
T |
|
| Q |
312 |
gctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1044371 |
gctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatg |
1044443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 1033684 - 1034056
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1033684 |
acagatgaatatggtggatcccttgagaatcgttgtcgatttgcattggaagttgttgacgctgttgtgaatgagataggagcagaaagagttggaatta |
1033783 |
T |
|
| Q |
112 |
gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgctctcaataagtacaatattcttta |
211 |
Q |
| |
|
|| ||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1033784 |
gattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatgccctcaataagtacaatattcttta |
1033883 |
T |
|
| Q |
212 |
ctgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
1033884 |
ctgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatg |
1033983 |
T |
|
| Q |
312 |
gctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatg |
384 |
Q |
| |
|
| ||| ||||| |||||||||||||| |||||| |||||||||| || || | |||||||||||| ||||||| |
|
|
| T |
1033984 |
gttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttatg |
1034056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 1065686 - 1066050
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
||||||||||| ||||| || || ||||| || ||||||||| || |||||||||||||||| |||| ||||||||||||||||| | ||||||||| | |
|
|
| T |
1065686 |
acagatgaatatggtgggtctctggagaaccgctgtcgatttgctttggaagttgttgaagctgttgcaaatgagataggagcagaaagagttggaataa |
1065785 |
T |
|
| Q |
112 |
gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgctctcaataagtacaatattcttta |
211 |
Q |
| |
|
|| ||||||||||||| || ||||||||| | ||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
1065786 |
gattatcaccttttgcggagtatgcagaatgtggagactccaaccccaatgaattgggactttatatggtcaatgccctcaataaatatggtattcttta |
1065885 |
T |
|
| Q |
212 |
ctgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatg |
311 |
Q |
| |
|
|||||| ||||||||||||||||| ||| | | | ||||| | |||| |||| |||| || ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
1065886 |
ctgtcatatggtggaaccaagaatgaaaactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatg |
1065985 |
T |
|
| Q |
312 |
gctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgt |
376 |
Q |
| |
|
| ||||||||| || ||| |||| || |||||| |||| ||||||||||||| |||||| ||||| |
|
|
| T |
1065986 |
gttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagaccttgt |
1066050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 1071413 - 1071771
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |||||||| ||| || |||||||||||||||| |||| |||||||||||| |||| | ||||||||| | |
|
|
| T |
1071413 |
acagatgagtatggtggatcccttgagaaccgttgtcggtttgctttggaagttgttgaagctgttgcaaatgagataggaacagaaagagttggaataa |
1071512 |
T |
|
| Q |
112 |
gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgctctcaataagtacaatattcttta |
211 |
Q |
| |
|
|| |||||||||||||||| ||| ||||| | ||||||||||| || || |||||||||||| ||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
1071513 |
gattatcaccttttgcagagtattcagaatgtggagactccaaccctaaagaattgggactttatatggttaatgccctcaataaatacggtattcttta |
1071612 |
T |
|
| Q |
212 |
ctgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatg |
311 |
Q |
| |
|
||||||||||||||||||||||| | | | | | ||||| | |||| |||| |||| || ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
1071613 |
ttgtcacatggtggaaccaagaatgataactgttggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatg |
1071712 |
T |
|
| Q |
312 |
gctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcaga |
370 |
Q |
| |
|
| ||||||||| || ||| |||| || |||||| |||| ||||||||||||| |||||| |
|
|
| T |
1071713 |
gttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcaga |
1071771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 1640865 - 1640508
Alignment:
| Q |
19 |
aatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatc |
118 |
Q |
| |
|
||||||||||| |||| || || ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| |
|
|
| T |
1640865 |
aatacggtggaacccttgaaaaccgttgtcgattcgctttggaaattgttgaagcagttgtgaatgagataggtgcagaaagagttggaattagattatc |
1640766 |
T |
|
| Q |
119 |
accttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgctctcaataagtacaatattctttactgtcac |
218 |
Q |
| |
|
||||| |||||||||| |||| | |||||||||||||| | |||||||| ||| ||||||||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
1640765 |
gcctttcgcagaatatggagaatgtggagactccaatcctgaagaattggggctttatatggttaatgccctcagtaaatacaatattctttactgtcac |
1640666 |
T |
|
| Q |
219 |
atggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatggctgcag |
318 |
Q |
| |
|
||||||||||||||||| ||| | | |||||| ||||| | | | |||| |||||||||||||||| || |||||||| ||||| || | ||| | |
|
|
| T |
1640665 |
atggtggaaccaagaatgaaaactattactgaaaaagttgaatgtcttcacagcttggtgccaatgagaaaagccttcaatggaacttttatagttgccg |
1640566 |
T |
|
| Q |
319 |
gaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgt |
376 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| |||| |||||| ||| |||||||||| |
|
|
| T |
1640565 |
gaggctattcgcgacaagatgggattgatgccatagttgaaaataagacagatcttgt |
1640508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 1058594 - 1058943
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| || | |||||||||||||||| |||| ||||||||||| ||||||| | |||||||| |
|
|
| T |
1058594 |
acagatgaatatggtggatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaatta |
1058693 |
T |
|
| Q |
112 |
gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgctctcaataagtacaatattcttta |
211 |
Q |
| |
|
|| ||||||||||| |||||||||||||| | | |||||| ||||||| |||||||||||| |||||| |||||| |||||||| || ||||||||| |
|
|
| T |
1058694 |
gattatcacctttttcagaatatgcagaatgtgtagactctaatcccagagaattgggactttatatggctaatgccctcaataaatatggtattcttta |
1058793 |
T |
|
| Q |
212 |
ctgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatg |
311 |
Q |
| |
|
|||||| |||||||||||||||| ||| | | | ||||| |||||| || || |||| || ||||| ||||||||||| ||||| ||||||||| || |
|
|
| T |
1058794 |
ctgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctg |
1058893 |
T |
|
| Q |
312 |
gctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaa |
361 |
Q |
| |
|
||||||||||| || ||| || | || |||||| |||| ||||||||||| |
|
|
| T |
1058894 |
gctgcaggaggttacgaccgaaatgatgggatcaatgccatagctgaaaa |
1058943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 1053329 - 1053691
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
||||||||||| |||||| |||| || ||||||||| ||||| | ||||| |||||||||| |||| ||||||||||| ||||| | ||||||||| | |
|
|
| T |
1053329 |
acagatgaatatggtggaacccttgaaaatcgttgtagatttgttttggaaattgttgaagctgttgcaaatgagataggtgcagaaagagttggaataa |
1053428 |
T |
|
| Q |
112 |
gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgctctcaataagtacaatattcttta |
211 |
Q |
| |
|
| |||||||||||| | ||| || ||| | |||||||| |||||| | |||||||||||| ||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
1053429 |
aattatcaccttttgaaaaatttggagattgtggagactcaaatccccaagaattgggactttatatggtgaatgccctcaataaatatggtattcttta |
1053528 |
T |
|
| Q |
212 |
ctgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatg |
311 |
Q |
| |
|
||||| ||||||||||||||||| || | ||| | | |||| | | ||| || ||||| |||| ||||||| ||||||||| ||||| ||| |
|
|
| T |
1053529 |
ttgtcatatggtggaaccaagaatggaaattcttgatgagaaaactgaatgtcattatagcttggtgtcaataagaaaggttttcaatggaacttttatg |
1053628 |
T |
|
| Q |
312 |
gctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatctt |
374 |
Q |
| |
|
| | | ||||||||||| |||||||| || ||| |||||||||||||||| | |||||||||| |
|
|
| T |
1053629 |
gttactggaggctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatctt |
1053691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 1046919 - 1047021
Alignment:
| Q |
274 |
tggtgccaatgagaaaggctttcaatggcactttcatggctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatct |
373 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| | | ||| ||||||| |||| |||||||||| |||||||||||||||| | || |||||| |
|
|
| T |
1046919 |
tggtgccagtgagaaaggctttcaatggcactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaatagggtagatct |
1047018 |
T |
|
| Q |
374 |
tgt |
376 |
Q |
| |
|
||| |
|
|
| T |
1047019 |
tgt |
1047021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 1046654 - 1046838
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
||||||||||| |||||| | || || || |||||| |||| | ||||| |||||||||| ||||| |||||||| || || || | ||||||||| | |
|
|
| T |
1046654 |
acagatgaatatggtggaactcttgaaaaccgttgtaaatttgttttggaaattgttgaagctgttgtaaatgagattggtgccgaaagagttggaataa |
1046753 |
T |
|
| Q |
112 |
gactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatgctctcaataa |
196 |
Q |
| |
|
||||||||||||| |||| | | |||| | |||||||| ||||| || | |||||| ||| | ||||||||||| |||||||| |
|
|
| T |
1046754 |
aactatcacctttttcagatttcgaagaatgtggagactcaaatccgaaggcattggggctttacatggttaatgccctcaataa |
1046838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 44171363 - 44171262
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || ||| | ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44171363 |
acagatgaatatggtggatccctagagaaccgatgttggtttggattggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaatta |
44171264 |
T |
|
| Q |
112 |
ga |
113 |
Q |
| |
|
|| |
|
|
| T |
44171263 |
ga |
44171262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 44191659 - 44191558
Alignment:
| Q |
12 |
acagatgaatacggtggatccctcgagaatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaatta |
111 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || ||| | ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44191659 |
acagatgaatatggtggatccctagagaaccgatgttggtttggattggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaatta |
44191560 |
T |
|
| Q |
112 |
ga |
113 |
Q |
| |
|
|| |
|
|
| T |
44191559 |
ga |
44191558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 54102925 - 54102841
Alignment:
| Q |
39 |
aatcgttgtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcacctt |
123 |
Q |
| |
|
||||||||||| || ||||| || ||||| |||||||||| ||||||| ||||| || |||||||| ||||||| ||||||| |
|
|
| T |
54102925 |
aatcgttgtcgcttccctctagaggttgtgaaagcagttgttgatgagattggagctgacaaagttggtgttagactttcacctt |
54102841 |
T |
|
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