View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_17 (Length: 339)
Name: NF10265_low_17
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 32589986 - 32589678
Alignment:
| Q |
13 |
aaggtaagtaaactttcttgaaagataaatgtattaatttcttcaataaagagtgttttgaaactcac--gcttcttgtggtattgcagataaacttgga |
110 |
Q |
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| T |
32589986 |
aaggtaagtagactttcttgaaagaaaaatgtattaatttcttaaataaagggtgttttgaaactcacaagcttcttgtggtattgcagataaacttgga |
32589887 |
T |
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| Q |
111 |
gttcagggaaagaaagtcaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagttttatttctcacaactta |
210 |
Q |
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| T |
32589886 |
gttcagggaaagaaagtaaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagtttgatttctcacaattta |
32589787 |
T |
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| Q |
211 |
taatgatactaaatttgtttaactttcaactcaaaacatggatttgcagcagcctacgataaatgcaaactaatgtaaccttataatgaaatcgtttgtg |
310 |
Q |
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| T |
32589786 |
taatgatactaaatttgtttaactttcaactcaaaacatggatctgcagcagcctacgataaatgcaaactaatgtaaccttataatgaaatcatttgtg |
32589687 |
T |
|
| Q |
311 |
tattatata |
319 |
Q |
| |
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||||||||| |
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| T |
32589686 |
tattatata |
32589678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 32600434 - 32600126
Alignment:
| Q |
13 |
aaggtaagtaaactttcttgaaagataaatgtattaatttcttcaataaagagtgttttgaaactcac--gcttcttgtggtattgcagataaacttgga |
110 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32600434 |
aaggtaagtagactttcttgaaagaaaaatgtattaatttcttaaataaagggtgttttgaaactcacaagcttcttgtggtattgcagataaacttgga |
32600335 |
T |
|
| Q |
111 |
gttcagggaaagaaagtcaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagttttatttctcacaactta |
210 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
32600334 |
gttcagggaaagaaagtaaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagtttgatttctcacaattta |
32600235 |
T |
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| Q |
211 |
taatgatactaaatttgtttaactttcaactcaaaacatggatttgcagcagcctacgataaatgcaaactaatgtaaccttataatgaaatcgtttgtg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32600234 |
taatgatactaaatttgtttaactttcaactcaaaacatggatctgcagcagcctacgataaatgcaaactaatgtaaccttataatgaaatcatttgtg |
32600135 |
T |
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| Q |
311 |
tattatata |
319 |
Q |
| |
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||||||||| |
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| T |
32600134 |
tattatata |
32600126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 34577723 - 34577579
Alignment:
| Q |
39 |
aaatgtattaatttcttcaataaagagtgttttgaaactcac--gcttcttgtggtattgcagataaacttggagttcagggaaagaaagtcaaaagcaa |
136 |
Q |
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||||||||| ||||||||||||||| |||||| ||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34577723 |
aaatgtatttatttcttcaataaagcatgttttaaaaatcatatgcttcttttggtcatgcagataaacttggagttcagggaaagaaagtaaaaagcaa |
34577624 |
T |
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| Q |
137 |
caatgatttagaggtgacattattttctttccctttatattttat |
181 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
34577623 |
caatgatttagaggtgatattattttcttttcctttatattttat |
34577579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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