View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_2 (Length: 746)
Name: NF10265_low_2
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 51 - 724
Target Start/End: Complemental strand, 31227283 - 31226598
Alignment:
| Q |
51 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatttcaattcattcttttt |
150 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31227283 |
tagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcgatttcaattcattcttttt |
31227184 |
T |
|
| Q |
151 |
---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
235 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31227183 |
ctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
31227084 |
T |
|
| Q |
236 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatttgaagaagaatg |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31227083 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatttgaagaagaatg |
31226984 |
T |
|
| Q |
336 |
ttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggcaacaaagccagctgct------aaggccaagccagccgctaagccaaa |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31226983 |
ttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggcaacaaagccagctgctaaggtgaaggccaagccagccgctaagccaaa |
31226884 |
T |
|
| Q |
430 |
ggcaaaagctgttgtcaagccaaagaccaaatctgttactgctaagcccaagcccaagcccagatctgctgccacaaagcccaagcccgctgctaccaag |
529 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
31226883 |
ggcaaaagctgttgtcaagccgaagaccaaatctgttactgctaagcccaaggc---------tgctgctgccacaaagcccaagcccgctgctaccaag |
31226793 |
T |
|
| Q |
530 |
tcaaaagctgcttctaaggccaaaactgctgcaaaagcgaaacctaatgcaaaggttgcaaagacaacaacaaggacttctccggggaagaaaattgcag |
629 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |
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| T |
31226792 |
tcaaaagctgcttctaaggccaaaactgctgcaaaagcgaaacctaatgcaaaggttgcaaagacaacagcaaggacttctccggggaagaaagtcgcag |
31226693 |
T |
|
| Q |
630 |
ctgcaaagccagcagcaaagaaagttgcggcggcaaagaagaaagctccggtgaagagcgtcaagcctaagactaagactgttaagtctccggcg |
724 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31226692 |
ctgcaaagccagcagcaaagaaagttgcggcggcaaagaagaaagctccggtgaagagcgtcaagcctaagactaagactgttaagtctccggcg |
31226598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 51 - 651
Target Start/End: Original strand, 31173171 - 31173783
Alignment:
| Q |
51 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatttcaattcattcttttt |
150 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31173171 |
tagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcgatttcaattcattcttttt |
31173270 |
T |
|
| Q |
151 |
---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
235 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31173271 |
ctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgtgtcgctgaaggagaggact |
31173370 |
T |
|
| Q |
236 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatttgaagaagaatg |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31173371 |
ggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatttgaagaagaatg |
31173470 |
T |
|
| Q |
336 |
ttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggcaacaaagccagctgct------aaggccaagccagccgctaagccaaa |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31173471 |
ttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggcaacaaagccagctgctaaggtgaaggccaagccagccgctaagccaaa |
31173570 |
T |
|
| Q |
430 |
ggcaaaagctgttgtcaagccaaagaccaaatctgttactgctaagcccaagcccaagcccagatctgctgccacaaagcccaagcccgctgctaccaag |
529 |
Q |
| |
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||| ||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||| | |||||||| | ||||| || ||| |
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| T |
31173571 |
ggctaaagctgttgtcaagccgaggaccaaatctgtaactgctaagcccaag------------gctgctgctgccaagcccaaatctgctgccacaaag |
31173658 |
T |
|
| Q |
530 |
tcaaaagctgc---ttctaaggccaaaactgctgcaaaagcgaaacctaatgcaaaggttgcaaagacaacaacaaggacttctccggggaagaaaattg |
626 |
Q |
| |
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| |||||||| | |||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |
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| T |
31173659 |
cccaaagctgctgttggtaaggccaaaactgctgcgaaagtgaagcctaatgcaaaggttgcaaagacaacgacaaggacttctccagggaagaaagttg |
31173758 |
T |
|
| Q |
627 |
cagctgcaaagccagcagcaaagaa |
651 |
Q |
| |
|
|| |||||||||||||||||||||| |
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| T |
31173759 |
caactgcaaagccagcagcaaagaa |
31173783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 194 - 387
Target Start/End: Complemental strand, 31232371 - 31232178
Alignment:
| Q |
194 |
cagatgattaaggatgcaattgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttcctt |
293 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31232371 |
cagatgattaaggatgcaattgtgactttgaaagagagaactggttcaagtcaatttgcaattgcgaaattcattgaagagaaacacaaacagcttcctt |
31232272 |
T |
|
| Q |
294 |
caaatttcaagaagttattgcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattcaagctctcttcggc |
387 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||| ||| |||| |
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| T |
31232271 |
caaatttcaagaagctattgcttcataatttgaagaagaacgttgcttctggaaagcttattaaggttaaaggttcattcaagctttctccggc |
31232178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 662 - 723
Target Start/End: Original strand, 31173776 - 31173837
Alignment:
| Q |
662 |
gcaaagaagaaagctccggtgaagagcgtcaagcctaagactaagactgttaagtctccggc |
723 |
Q |
| |
|
|||||||||||| |||| ||||||| ||| |||||||||||||||||||||| ||||||||| |
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|
| T |
31173776 |
gcaaagaagaaaactccagtgaagaacgtgaagcctaagactaagactgttaggtctccggc |
31173837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 51 - 376
Target Start/End: Original strand, 32797854 - 32798203
Alignment:
| Q |
51 |
tagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttgatt-tcaattca------- |
142 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
32797854 |
tagcgaaggaatccaaacctaagaaagcttccaaaccacgaaaccctgcttctcatcctacttacgaagaggttcgtttcaattctcaattcactccttt |
32797953 |
T |
|
| Q |
143 |
----ttctt---tttgttacaaattatagtttcaattggatctaattt-----------gaacgaattgcagatgattaaggatgcaattgtgtcgctga |
224 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || |||| |
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| T |
32797954 |
ctaattcttagttttgttacgaattatagtttcaattggatctaattttttattgatttgaacaatttgcagatgattaaggatgcaattgtatctctga |
32798053 |
T |
|
| Q |
225 |
aggagaggactggttcaagccaatacgcaattgcgaaattc-atcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgcttcagaatt |
323 |
Q |
| |
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|||| ||||| |||||||||||||| || ||||| |||||| || ||||||||||||||||||||||| |||||||||||||| |||||| |||||| || |
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| T |
32798054 |
aggataggacgggttcaagccaatatgcgattgcaaaattcaattgaagagaaacacaaacagcttccatcaaatttcaagaaattattgtttcagagtt |
32798153 |
T |
|
| Q |
324 |
tgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattcaag |
376 |
Q |
| |
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| ||||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
32798154 |
t---gaagaatgttgcttctggaaagctcgttaaggtgaaaggttcattcaag |
32798203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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