View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_20 (Length: 331)
Name: NF10265_low_20
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 26914208 - 26913898
Alignment:
| Q |
19 |
taggtctagtatgcaaaccatacctggaggcgtgcagcaaccacatcacatatcttactggaattgaagtgttcccagttcttcccagaggctgtcagtt |
118 |
Q |
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| T |
26914208 |
taggtctagtatgcaaaccatacctggaggcgtgcagcaaccacatcacatatcttactggaattgaagtgttcccagttcttcccagaggctgtcagtt |
26914109 |
T |
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| Q |
119 |
gaaatttccaagctgcctcatgcttggtgaaattaacaaaggcatagcctttgtttaactcagtgctacaaattaattaaacaatgtcaaaattagc--- |
215 |
Q |
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| T |
26914108 |
gaaatttccaagctgcctcatgcttggtgaaattaacaaaggcatagcctttgtttaactcagtactgcaaattaattaaacaatgtcacaattagcagt |
26914009 |
T |
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| Q |
216 |
-----aacaaatccacattttacacgcaaattctagtgattgaagttatttggcagtgtaccagaaatcaataggcaagtatacggcattaaaagcaaaa |
310 |
Q |
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| T |
26914008 |
gtatgaacaaatccacattttacacacaaattctagtgattgaagttatttggcagtgtaccaaaaatcaataggcaagtatacggcattaaaagcaaaa |
26913909 |
T |
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| Q |
311 |
gtactttcttc |
321 |
Q |
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| T |
26913908 |
gtactttcttc |
26913898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 3803846 - 3803939
Alignment:
| Q |
122 |
atttccaagctgcctcatgcttggtgaaattaacaaaggcatagcctttgtttaactcagtgctacaaattaattaaacaatgtcaaaattagca |
216 |
Q |
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| T |
3803846 |
atttccaagctgcctaatgcttagtgaa-ttcacaaaggcatagccattgtttaactcagttctgcaaattaattaaacaatgtcacaattagca |
3803939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 3803977 - 3804061
Alignment:
| Q |
238 |
aaattctagtgattgaagtta-tttggcagtgtaccagaaatcaataggcaagtatacggcattaaaagcaaaagtactttcttc |
321 |
Q |
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|||||| |||||||||||||| ||||||||||||| |||||||||||| || || | | || |||||||||||||||||||| |
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| T |
3803977 |
aaattccagtgattgaagttattttggcagtgtacttgaaatcaataggtaaataaaggaaatcgaaagcaaaagtactttcttc |
3804061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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