View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_low_22 (Length: 311)

Name: NF10265_low_22
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_low_22
NF10265_low_22
[»] chr7 (9 HSPs)
chr7 (1-141)||(31546354-31546489)
chr7 (207-253)||(31550348-31550394)
chr7 (143-174)||(38837213-38837244)
chr7 (143-173)||(10343636-10343666)
chr7 (143-173)||(11044185-11044215)
chr7 (143-172)||(7389387-7389416)
chr7 (143-172)||(8080456-8080485)
chr7 (143-171)||(36361986-36362014)
chr7 (143-171)||(36362025-36362053)
[»] chr2 (6 HSPs)
chr2 (143-176)||(33436173-33436206)
chr2 (143-173)||(38882886-38882916)
chr2 (143-172)||(9058478-9058507)
chr2 (143-172)||(10249455-10249484)
chr2 (143-172)||(30915461-30915490)
chr2 (143-171)||(32505721-32505749)
[»] chr3 (4 HSPs)
chr3 (143-179)||(49607405-49607441)
chr3 (143-172)||(11095426-11095455)
chr3 (143-172)||(54868968-54868997)
chr3 (147-175)||(33644359-33644387)
[»] chr4 (4 HSPs)
chr4 (143-174)||(480520-480551)
chr4 (143-174)||(42044440-42044471)
chr4 (143-173)||(29239883-29239913)
chr4 (146-178)||(48183125-48183157)
[»] chr6 (1 HSPs)
chr6 (143-173)||(6209538-6209568)
[»] chr5 (2 HSPs)
chr5 (142-172)||(36733014-36733044)
chr5 (143-179)||(18520957-18520993)
[»] chr1 (2 HSPs)
chr1 (143-173)||(2581912-2581942)
chr1 (143-172)||(38632394-38632423)
[»] chr8 (1 HSPs)
chr8 (143-171)||(44507160-44507188)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31546489 - 31546354
Alignment:
Q  1 ggaaaacaaaagacatagttgaaatgatattgatatcttcttcttcatgcttaatgaatgatgatgcagagtaagttgtgtatatgattttgattaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  31546489 ggaaaacaaaagacatagttgaaatgatattgatatcttcttcttcatgcttaatg-atg-cgatgcagagtaagttgtgtatatgattttgattaatga 31546392  T
Q  101 tgcatgaattccctactaaactaccagaggaaggaatattt 141  Q
    ||||||||||||   ||||||||| ||||||||||||||||    
T  31546391 tgcatgaattcc---ctaaactactagaggaaggaatattt 31546354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 31550394 - 31550348
Alignment:
Q  207 gccgtcaactaagtagtgcgcgccaccgagtttttatcaaacaaata 253  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  31550394 gccgtcaacgaagtagtgcgcgccaccgagtttttattaaacaaata 31550348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 38837244 - 38837213
Alignment:
Q  143 acctaagggtgtctatgtatcattactctttt 174  Q
    ||||||||||||||||||||||||||||||||    
T  38837244 acctaagggtgtctatgtatcattactctttt 38837213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Original strand, 10343636 - 10343666
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttt 173  Q
    |||||||||||||||||||||||||||||||    
T  10343636 acctaagggtgtctatgtatcattactcttt 10343666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Complemental strand, 11044215 - 11044185
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttt 173  Q
    |||||||||||||||||||||||||||||||    
T  11044215 acctaagggtgtctatgtatcattactcttt 11044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 7389416 - 7389387
Alignment:
Q  143 acctaagggtgtctatgtatcattactctt 172  Q
    ||||||||||||||||||||||||||||||    
T  7389416 acctaagggtgtctatgtatcattactctt 7389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 8080456 - 8080485
Alignment:
Q  143 acctaagggtgtctatgtatcattactctt 172  Q
    ||||||||||||||||||||||||||||||    
T  8080456 acctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 36361986 - 36362014
Alignment:
Q  143 acctaagggtgtctatgtatcattactct 171  Q
    |||||||||||||||||||||||||||||    
T  36361986 acctaagggtgtctatgtatcattactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 36362053 - 36362025
Alignment:
Q  143 acctaagggtgtctatgtatcattactct 171  Q
    |||||||||||||||||||||||||||||    
T  36362053 acctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 33436173 - 33436206
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttttat 176  Q
    ||||||||||||||||||||||||||||||||||    
T  33436173 acctaagggtgtctatgtatcattactcttttat 33436206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Original strand, 38882886 - 38882916
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttt 173  Q
    |||||||||||||||||||||||||||||||    
T  38882886 acctaagggtgtctatgtatcattactcttt 38882916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 9058507 - 9058478
Alignment:
Q  143 acctaagggtgtctatgtatcattactctt 172  Q
    ||||||||||||||||||||||||||||||    
T  9058507 acctaagggtgtctatgtatcattactctt 9058478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 10249455 - 10249484
Alignment:
Q  143 acctaagggtgtctatgtatcattactctt 172  Q
    ||||||||||||||||||||||||||||||    
T  10249455 acctaagggtgtctatgtatcattactctt 10249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 30915490 - 30915461
Alignment:
Q  143 acctaagggtgtctatgtatcattactctt 172  Q
    ||||||||||||||||||||||||||||||    
T  30915490 acctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 32505721 - 32505749
Alignment:
Q  143 acctaagggtgtctatgtatcattactct 171  Q
    |||||||||||||||||||||||||||||    
T  32505721 acctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 49607441 - 49607405
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttttattaa 179  Q
    |||||||||||||||||||||||||||||||| ||||    
T  49607441 acctaagggtgtctatgtatcattactcttttgttaa 49607405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 11095426 - 11095455
Alignment:
Q  143 acctaagggtgtctatgtatcattactctt 172  Q
    ||||||||||||||||||||||||||||||    
T  11095426 acctaagggtgtctatgtatcattactctt 11095455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 54868968 - 54868997
Alignment:
Q  143 acctaagggtgtctatgtatcattactctt 172  Q
    ||||||||||||||||||||||||||||||    
T  54868968 acctaagggtgtctatgtatcattactctt 54868997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 33644359 - 33644387
Alignment:
Q  147 aagggtgtctatgtatcattactctttta 175  Q
    |||||||||||||||||||||||||||||    
T  33644359 aagggtgtctatgtatcattactctttta 33644387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 480520 - 480551
Alignment:
Q  143 acctaagggtgtctatgtatcattactctttt 174  Q
    ||||||||||||||||||||||||||||||||    
T  480520 acctaagggtgtctatgtatcattactctttt 480551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 42044440 - 42044471
Alignment:
Q  143 acctaagggtgtctatgtatcattactctttt 174  Q
    ||||||||||||||||||||||||||||||||    
T  42044440 acctaagggtgtctatgtatcattactctttt 42044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Complemental strand, 29239913 - 29239883
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttt 173  Q
    |||||||||||||||||||||||||||||||    
T  29239913 acctaagggtgtctatgtatcattactcttt 29239883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 48183125 - 48183157
Alignment:
Q  146 taagggtgtctatgtatcattactcttttatta 178  Q
    ||||||||||||||||||||||||||| |||||    
T  48183125 taagggtgtctatgtatcattactcttatatta 48183157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Original strand, 6209538 - 6209568
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttt 173  Q
    |||||||||||||||||||||||||||||||    
T  6209538 acctaagggtgtctatgtatcattactcttt 6209568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 36733014 - 36733044
Alignment:
Q  142 tacctaagggtgtctatgtatcattactctt 172  Q
    |||||||||||||||||||||||||||||||    
T  36733014 tacctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 18520957 - 18520993
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttttattaa 179  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  18520957 acctaagggtgtctatgtatcattattctttttttaa 18520993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Complemental strand, 2581942 - 2581912
Alignment:
Q  143 acctaagggtgtctatgtatcattactcttt 173  Q
    |||||||||||||||||||||||||||||||    
T  2581942 acctaagggtgtctatgtatcattactcttt 2581912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 38632394 - 38632423
Alignment:
Q  143 acctaagggtgtctatgtatcattactctt 172  Q
    ||||||||||||||||||||||||||||||    
T  38632394 acctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 44507160 - 44507188
Alignment:
Q  143 acctaagggtgtctatgtatcattactct 171  Q
    |||||||||||||||||||||||||||||    
T  44507160 acctaagggtgtctatgtatcattactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University