View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_23 (Length: 309)
Name: NF10265_low_23
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 39049790 - 39050073
Alignment:
| Q |
20 |
catttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatga |
119 |
Q |
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| T |
39049790 |
catttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatga |
39049889 |
T |
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| Q |
120 |
taataccttatgggttggatcagtggcagctccagatgatgcacctatgcatagttttattatgaatttacgtggttatgtcattgagttcaacaaatat |
219 |
Q |
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| T |
39049890 |
taataccttatgggttggatcagtggcagctccagatgatgcacctatgcatagttttattatgaatttacgtggttatgtgattgagttcaacaagtat |
39049989 |
T |
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| Q |
220 |
ttagctcaagatttaaggattgaaatttgtcagctttcggtaggtgatggaattaccttatgtcgtcgcatctattcatctctc |
303 |
Q |
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| T |
39049990 |
ttagctcaagatttaaggattgaaatttgtcagctttcggtaggtgatggaattaccttatgtcgtcgcatctattgatctctc |
39050073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 39238148 - 39238417
Alignment:
| Q |
22 |
tttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatgata |
121 |
Q |
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| T |
39238148 |
tttgactttgtttttgtggatgctgataagaataactacttaaactatcacgtgaggatgattgatcttgttaaggttgggggattaatcggttacgata |
39238247 |
T |
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| Q |
122 |
ataccttatgggttggatcagtggcagctccagatgatgcacctatgcatag-ttttattatgaatttacgtggttatgtcattgagttcaacaaatatt |
220 |
Q |
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| T |
39238248 |
acaccttatggagtggatcagtggcagctccacctgatgcacctatg-atggatttcattaggaatttacgtggttatgtgattgagttcaataaacatc |
39238346 |
T |
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| Q |
221 |
tagctcaagatttaaggattgaaatttgtcagctttcggtaggtgatggaattaccttatgtcgtcgcatc |
291 |
Q |
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| T |
39238347 |
tagctcaagattcaagaattgagatttgtcagctatctatagctgatgggattaccctatgtcgccgcatc |
39238417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 39055868 - 39056124
Alignment:
| Q |
20 |
catttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatga |
119 |
Q |
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| T |
39055868 |
catttgattttgtttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgttaaagttggaggattgattggatatga |
39055967 |
T |
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| Q |
120 |
taataccttatgggttggatcagtggcagctccagatgatgcacctatgcatagttttattatgaatttacgtggttatgtcattgagttcaacaaatat |
219 |
Q |
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| T |
39055968 |
taatactttatggtttggatcagttgctgttccagatgatgctcctatgctggatttcgttaaacgtttacgtggtcatgtgattgagcttaacaaatat |
39056067 |
T |
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| Q |
220 |
ttagctcaagatttaaggattgaaatttgtcagctttcggtaggtgatggaattacc |
276 |
Q |
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| T |
39056068 |
ttagctaaagattcaagggtcgagatttgtcagctccccgtcggtgatggcattacc |
39056124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 39291265 - 39291009
Alignment:
| Q |
19 |
acatttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgtgaaagttggaggattgattggatatg |
118 |
Q |
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| T |
39291265 |
acatttgatttcgtttatgtggatgctgataaggataactacattaactatcacaagagggtggttgagcttgttaaagttggaggattggttgcatatg |
39291166 |
T |
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| Q |
119 |
ataataccttatgggttggatcagtggcagctccagatgatgcacctatgcatagttttattatgaatttacgtggttatgtcattgagttcaacaaata |
218 |
Q |
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| T |
39291165 |
acaacaccttatggagtggttctgttgcggttccatcagatgcaccgatgacaagttacgttaggaattttcgtggtcatgtgattgagtttaacaaaca |
39291066 |
T |
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| Q |
219 |
tttagctcaagatttaaggattgaaatttgtcagctttcggtaggtgatggaattac |
275 |
Q |
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| T |
39291065 |
tttagcccaggatttaaggattcagatctgtcaactctcagtaggcgatggaattac |
39291009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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