View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10265_low_28 (Length: 296)
Name: NF10265_low_28
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 46 - 278
Target Start/End: Original strand, 46553520 - 46553751
Alignment:
| Q |
46 |
tcttgacagtttacactaaatccagtagttgcaaattgcaaagataatatgattcaatattagagttaactttcactagtagtatagtgtcaaggatgaa |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46553520 |
tcttgacagtttacactaaatccagtagttgcaaattgcaaagataatatgattcaatattagagttaactttcactagtagtatagtgtcaaggatgaa |
46553619 |
T |
|
| Q |
146 |
gaatcaaaacatgaggcagcaacccattcaaaatcaaaattcaaaactataatcaataatcttaaatcttatcatcatatattagtctcaaaagcagaaa |
245 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46553620 |
gaatcaaaacatgaggcagcaa-ccattcaaaatcaaaattcaaaactataatcaataatcttaaatcttatcatcatatattagtctcaaaagcagaaa |
46553718 |
T |
|
| Q |
246 |
agcaaatacgacaaactaaatccatttgatcca |
278 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
46553719 |
agcaaatacgacaaactcaatccatttgatcca |
46553751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 46539645 - 46539589
Alignment:
| Q |
72 |
agttgcaaattgcaaagataatatgattcaatattagagttaactttcactagtagt |
128 |
Q |
| |
|
||||||||||| ||| ||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
46539645 |
agttgcaaattacaatgataacattattccatattagagttaactttcactagtagt |
46539589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 26465855 - 26465931
Alignment:
| Q |
48 |
ttgacagtttacactaaatccagtagttgcaaattgcaaagataatatgattcaatattagagttaactttcactag |
124 |
Q |
| |
|
||||||||| |||||| || ||| | ||||||||||||| ||||| |||| | | |||||||||||||||||||||| |
|
|
| T |
26465855 |
ttgacagttgacactatatgcagcatttgcaaattgcaatgataacatgactgagtattagagttaactttcactag |
26465931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 29629288 - 29629239
Alignment:
| Q |
74 |
ttgcaaattgcaaagataatatgattcaatattagagttaactttcacta |
123 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
29629288 |
ttgcaatttgcaatgataacatgattcaataatagagttagctttcacta |
29629239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 14607587 - 14607619
Alignment:
| Q |
72 |
agttgcaaattgcaaagataatatgattcaata |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
14607587 |
agttgcaaattgcaatgataatatgattcaata |
14607619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University