View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_29 (Length: 294)
Name: NF10265_low_29
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 13708563 - 13708298
Alignment:
| Q |
18 |
gaatggggagtgtatcaacaatcatatatttagagcctactttgttcgaaatgttaccattgataacttgatgactccttacaccaaaagttggaatgaa |
117 |
Q |
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| T |
13708563 |
gaatggggagtgtatcgacaataatatatttggatcccactttgttcgaaatgtcaccattgataacttgatgactccttacaccaaaagttggaatgaa |
13708464 |
T |
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| Q |
118 |
accgtggttcgaaatgtttttagtgcaaatttagcctccaaaattctgaatacaccgttaattaatcaagtcgaaagtgatcggctattatggaaagtgg |
217 |
Q |
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| T |
13708463 |
actgtggttcgaccaatttttagtgcaaatttagcctccaacattctgaatacactgttaattaatcaagtccaaagtgatcgtctcttatggaaagtgg |
13708364 |
T |
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| Q |
218 |
aaaagaatggtcgttattctgtgcgtagtgcttatcgactatttatcgaagatctcattgattctt |
283 |
Q |
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| T |
13708363 |
aaaagaatggttgttattctgtgtgtagtgtttatcggctatgtgtcgaagatctcattaattctt |
13708298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 33649882 - 33649961
Alignment:
| Q |
208 |
tggaaagtggaaaagaatggtcgttattctgtgcgtagtgcttatcgactatttatcgaagatctcattgattcttctca |
287 |
Q |
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| T |
33649882 |
tggaaagcggaaaagaatggtcgttatactgtgtgcggtgcttatcgactctgtattgacgagctcattgattcttctca |
33649961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 42079496 - 42079539
Alignment:
| Q |
208 |
tggaaagtggaaaagaatggtcgttattctgtgcgtagtgctta |
251 |
Q |
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| T |
42079496 |
tggaaagttgaaaagaatggtcgttatttggtgcgtagtgctta |
42079539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 17393094 - 17393051
Alignment:
| Q |
208 |
tggaaagtggaaaagaatggtcgttattctgtgcgtagtgctta |
251 |
Q |
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| T |
17393094 |
tggaaagctgaaaagaatggtcgttattcagtgcgtagtgctta |
17393051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 49498430 - 49498481
Alignment:
| Q |
208 |
tggaaagtggaaaagaatggtcgttattctgtgcgtagtgcttatcgactat |
259 |
Q |
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| T |
49498430 |
tggaaagcagaaaaaaatggtcgttattctgtacgtagtgcttatcggctat |
49498481 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 29956578 - 29956533
Alignment:
| Q |
208 |
tggaaagtggaaaagaatggtcgttattctgtgcgtagtgcttatc |
253 |
Q |
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| T |
29956578 |
tggaaagcggaaaagaatagtcgttattctgtgtgtagtgattatc |
29956533 |
T |
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