View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_low_30 (Length: 288)

Name: NF10265_low_30
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_low_30
NF10265_low_30
[»] chr4 (2 HSPs)
chr4 (104-274)||(17777051-17777221)
chr4 (44-89)||(17777008-17777053)
[»] chr8 (2 HSPs)
chr8 (110-146)||(13456493-13456529)
chr8 (110-144)||(43594302-43594336)
[»] chr3 (5 HSPs)
chr3 (93-144)||(3427537-3427588)
chr3 (93-144)||(32651422-32651473)
chr3 (110-144)||(46552989-46553023)
chr3 (108-144)||(1884058-1884094)
chr3 (72-144)||(37788449-37788521)
[»] chr1 (6 HSPs)
chr1 (93-144)||(40814392-40814443)
chr1 (94-144)||(50919996-50920046)
chr1 (71-132)||(19940868-19940929)
chr1 (113-150)||(42787269-42787306)
chr1 (94-150)||(28411372-28411428)
chr1 (112-144)||(44961825-44961857)
[»] chr6 (1 HSPs)
chr6 (111-145)||(28968154-28968188)
[»] chr5 (2 HSPs)
chr5 (110-144)||(5156109-5156143)
chr5 (121-149)||(21236470-21236498)
[»] chr7 (1 HSPs)
chr7 (108-149)||(24438226-24438267)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 104 - 274
Target Start/End: Original strand, 17777051 - 17777221
Alignment:
Q  104 atctttaaggtctcagattcgattctctctagtgtcaatttcaatgaactagttaaggcaatgtcttcgatctttatgacaaacaaacgcaccaagattt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  17777051 atctttaaggtctcagattcgattctctctagtgtcaatttcaatgaactagttaaggcaatgtcttcaatctttatgaaaaacaaacgcaccaagattt 17777150  T
Q  204 gtgtacattctaatttgagaggtaacatgtcaaaccttaatcaagatatttcaatattttcataacatttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17777151 gtgtacattctaatttgagaggtaacatgtcaaaccttaatcaagatatttcaatattttcataacatttt 17777221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 17777008 - 17777053
Alignment:
Q  44 gtatctattaaactcacttgagttgcaggtggtgttaacttagatc 89  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  17777008 gtatctattaaactcacttgagttgcaggtggtgttgacttagatc 17777053  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 13456529 - 13456493
Alignment:
Q  110 aaggtctcagattcgattctctctagtgtcaatttca 146  Q
    |||||||||||||||||||||||||||||||||||||    
T  13456529 aaggtctcagattcgattctctctagtgtcaatttca 13456493  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 43594336 - 43594302
Alignment:
Q  110 aaggtctcagattcgattctctctagtgtcaattt 144  Q
    |||||||||| ||||||||||||||||||||||||    
T  43594336 aaggtctcaggttcgattctctctagtgtcaattt 43594302  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 3427588 - 3427537
Alignment:
Q  93 ggagtgtggtcatctttaaggtctcagattcgattctctctagtgtcaattt 144  Q
    |||||||| || || | |||||||||||||||||||||||||||| ||||||    
T  3427588 ggagtgtgctcctcctcaaggtctcagattcgattctctctagtgccaattt 3427537  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 32651473 - 32651422
Alignment:
Q  93 ggagtgtggtcatctttaaggtctcagattcgattctctctagtgtcaattt 144  Q
    |||||||| || || | ||| |||||||||||||||||||||||||||||||    
T  32651473 ggagtgtgctcctcctcaagatctcagattcgattctctctagtgtcaattt 32651422  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 46552989 - 46553023
Alignment:
Q  110 aaggtctcagattcgattctctctagtgtcaattt 144  Q
    |||||||||||||||||||||||||||| ||||||    
T  46552989 aaggtctcagattcgattctctctagtgccaattt 46553023  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 1884058 - 1884094
Alignment:
Q  108 ttaaggtctcagattcgattctctctagtgtcaattt 144  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  1884058 ttaaggtctcagattcgaatctctctcgtgtcaattt 1884094  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 37788521 - 37788449
Alignment:
Q  72 gtggtgttaacttagatccttggagtgtggtcatctttaaggtctcagattcgattctctctagtgtcaattt 144  Q
    ||||| || |||| || ||| |||||||| || || | |||||||||| ||||||||||||||||| ||||||    
T  37788521 gtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaattt 37788449  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 40814443 - 40814392
Alignment:
Q  93 ggagtgtggtcatctttaaggtctcagattcgattctctctagtgtcaattt 144  Q
    |||||||| ||||| || |||| |||| ||||||||||||||||||||||||    
T  40814443 ggagtgtgctcatccttgaggtttcaggttcgattctctctagtgtcaattt 40814392  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 50919996 - 50920046
Alignment:
Q  94 gagtgtggtcatctttaaggtctcagattcgattctctctagtgtcaattt 144  Q
    ||||||| ||||| ||||||| |||| ||||||||||||| ||||||||||    
T  50919996 gagtgtgctcatccttaaggtttcaggttcgattctctctggtgtcaattt 50920046  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 19940929 - 19940868
Alignment:
Q  71 ggtggtgttaacttagatccttggagtgtggtcatctttaaggtctcagattcgattctctc 132  Q
    |||||||||| ||| | ||||||||||||| || || |||||||||||| || |||||||||    
T  19940929 ggtggtgttagcttgggtccttggagtgtgctcctccttaaggtctcaggtttgattctctc 19940868  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 42787269 - 42787306
Alignment:
Q  113 gtctcagattcgattctctctagtgtcaatttcaatga 150  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  42787269 gtctcagattcgagtctctctagtgtcaatttgaatga 42787306  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 28411372 - 28411428
Alignment:
Q  94 gagtgtggtcatctttaaggtctcagattcgattctctctagtgtcaatttcaatga 150  Q
    ||||||| || ||||| ||||||||||||| ||||||||| ||| |||||| |||||    
T  28411372 gagtgtgctcctctttgaggtctcagattcaattctctctggtgccaatttaaatga 28411428  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 44961825 - 44961857
Alignment:
Q  112 ggtctcagattcgattctctctagtgtcaattt 144  Q
    |||||||| ||||||||||||||||||||||||    
T  44961825 ggtctcaggttcgattctctctagtgtcaattt 44961857  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 28968188 - 28968154
Alignment:
Q  111 aggtctcagattcgattctctctagtgtcaatttc 145  Q
    ||||||||||||||||||||||||| |||||||||    
T  28968188 aggtctcagattcgattctctctagcgtcaatttc 28968154  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 5156143 - 5156109
Alignment:
Q  110 aaggtctcagattcgattctctctagtgtcaattt 144  Q
    |||||||||||||||||||||||| ||||||||||    
T  5156143 aaggtctcagattcgattctctctggtgtcaattt 5156109  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 21236498 - 21236470
Alignment:
Q  121 ttcgattctctctagtgtcaatttcaatg 149  Q
    |||||||||||||||||||||||||||||    
T  21236498 ttcgattctctctagtgtcaatttcaatg 21236470  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 24438267 - 24438226
Alignment:
Q  108 ttaaggtctcagattcgattctctctagtgtcaatttcaatg 149  Q
    ||||||| |||||||||||||||||| |||||||||| ||||    
T  24438267 ttaaggtttcagattcgattctctctggtgtcaatttgaatg 24438226  T

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