View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_low_31 (Length: 285)

Name: NF10265_low_31
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_low_31
NF10265_low_31
[»] chr3 (2 HSPs)
chr3 (20-275)||(47846399-47846651)
chr3 (59-111)||(14778734-14778786)
[»] chr1 (2 HSPs)
chr1 (24-155)||(4686087-4686218)
chr1 (47-89)||(38720066-38720108)
[»] chr4 (1 HSPs)
chr4 (47-115)||(40253987-40254055)
[»] chr2 (1 HSPs)
chr2 (46-108)||(40819427-40819489)
[»] chr7 (2 HSPs)
chr7 (53-89)||(13297808-13297844)
chr7 (58-94)||(33928495-33928531)
[»] chr5 (1 HSPs)
chr5 (47-111)||(5113879-5113943)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 47846651 - 47846399
Alignment:
Q  20 gcgcgcagatggtcggtgattgcgggtcaattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagcttttaggga 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47846651 gcgcgcagatggtcggtgattgcgggtcaattgcccggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagctttttggga 47846552  T
Q  120 agcatcgtaaagaacaacaattacaagcacgtaataaattattagctagtgctaatcatgagagcaatggaagaaggagtgatcagaattcttcatctaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  47846551 agcatcgtaaagaacaacaattacaagcacgtaataaattattagctagtgctaatcatgagagcaatggaagaaggagtg---agaattcttcatctaa 47846455  T
Q  220 tttaatttctgatcaacatattttacaaccatattgttggccacaaaatgttcatc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47846454 tttaatttctgatcaacatattttacaaccatattgttggccacaaaatattcatc 47846399  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 14778786 - 14778734
Alignment:
Q  59 agaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagct 111  Q
    ||||| || |||||| | |||||| ||||||||||||| ||||||||||||||    
T  14778786 agaacagacaatgatgttaagaacaattggaacacaaagctgaaaaagaagct 14778734  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 4686087 - 4686218
Alignment:
Q  24 gcagatggtcggtgattgcgggtcaattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagcttttagggaagca 123  Q
    |||| |||||| | ||||| | ||||||||| |||||||| |||||||| ||||||||||||||||| ||||   |||||||||||||||| ||||| ||    
T  4686087 gcaggtggtcgataattgcagctcaattgccaggaagaactgataatgacataaagaactattggaatacaaggttgaaaaagaagcttttggggaaaca 4686186  T
Q  124 tcgtaaagaacaacaattacaagcacgtaata 155  Q
     |||||||| ||||||  ||||||||||||||    
T  4686187 ccgtaaagatcaacaacaacaagcacgtaata 4686218  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 38720066 - 38720108
Alignment:
Q  47 caattgccgggaagaaccgataatgatataaagaactattgga 89  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||    
T  38720066 caattaccgggaagaaccgacaatgaaataaagaactattgga 38720108  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 40254055 - 40253987
Alignment:
Q  47 caattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagctttta 115  Q
    ||||| || ||| |||| ||||||||||||||||||||||||||||||||  |||| ||||| ||||||    
T  40254055 caattaccaggacgaacggataatgatataaagaactattggaacacaaagttgaagaagaaactttta 40253987  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 40819489 - 40819427
Alignment:
Q  46 tcaattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaa 108  Q
    |||||| || |||||||| ||||||||||| || ||||| |||||||||||||| || |||||    
T  40819489 tcaattaccaggaagaactgataatgatatcaaaaactactggaacacaaaactaaagaagaa 40819427  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 13297808 - 13297844
Alignment:
Q  53 ccgggaagaaccgataatgatataaagaactattgga 89  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  13297808 ccgggaagaaccgataatgagataaagaactactgga 13297844  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 33928531 - 33928495
Alignment:
Q  58 aagaaccgataatgatataaagaactattggaacaca 94  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  33928531 aagaacagataatgatataaagaattattggaacaca 33928495  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 5113879 - 5113943
Alignment:
Q  47 caattgccgggaagaaccgataatgatataaagaactattggaacacaaaactgaaaaagaagct 111  Q
    ||||| || ||| |||| |||||||||||||||||||| |||||||| |  ||||| ||||||||    
T  5113879 caattaccaggacgaacggataatgatataaagaactactggaacactaggctgaagaagaagct 5113943  T

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