View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_39 (Length: 253)
Name: NF10265_low_39
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_39 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 1090685 - 1090854
Alignment:
| Q |
68 |
tacaacacatgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgt |
166 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1090685 |
tacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctacagatgggcaagagattgccgt |
1090784 |
T |
|
| Q |
167 |
caaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1090785 |
caaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaa |
1090854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 1049963 - 1050131
Alignment:
| Q |
68 |
tacaacacatgagaaatctcttgagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtc |
167 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1049963 |
tacaacacatgagaaatctcttgagtctcattttctaacaattttttccaactataatatttagggtacactagctacagatgggcaagagattgccgtc |
1050062 |
T |
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| Q |
168 |
aaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaa |
236 |
Q |
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|||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
1050063 |
aaaaggctttcaggaagttcgaaacaaggaacaagagaatttaaaaatgaagttatattatgtgcaaaa |
1050131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 1076879 - 1077048
Alignment:
| Q |
68 |
tacaacacatgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgt |
166 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
1076879 |
tacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctatggatgggcgagagattgccgt |
1076978 |
T |
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| Q |
167 |
caaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1076979 |
caaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaa |
1077048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 1300141 - 1299972
Alignment:
| Q |
68 |
tacaacacatgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgt |
166 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
1300141 |
tacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctatggatgggcgagagattgccgt |
1300042 |
T |
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| Q |
167 |
caaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1300041 |
caaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaa |
1299972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 1107089 - 1107243
Alignment:
| Q |
76 |
atgagaaatctcttgagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggct |
175 |
Q |
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|||||||| | |||||||||| ||| |||||||||||||| |||||||| |||||||||||||| | ||| | | ||||||||||||||||||||| |
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| T |
1107089 |
atgagaaaacccttgagtctctttttctaacaattttttctaactataaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggct |
1107188 |
T |
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| Q |
176 |
ttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgt |
230 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
1107189 |
ttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgt |
1107243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1316289 - 1316218
Alignment:
| Q |
1 |
cctgaatctaaagaaatacaacaagaattaattttaataagtaaaagcatgtgacagagtaaattggtacaa |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1316289 |
cctgaatctaaagaaatacaacaagaattaattttaataagtaaaagcatgtgacagagtaaattggtacaa |
1316218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 13854732 - 13854814
Alignment:
| Q |
148 |
atgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgt |
230 |
Q |
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| T |
13854732 |
atgggcaagaaattgctgtcaaaaggctttcaaggagttctggacaaggacctaaagagttttaaaatgaagttatattatgt |
13854814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43483816 - 43483760
Alignment:
| Q |
1 |
cctgaatctaaagaaatacaacaagaattaattttaataagtaaaagcatgtgacag |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43483816 |
cctgaatctaaagaaatacaacaagaattaattttaataagtaaaagcatgtgacag |
43483760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 28419535 - 28419602
Alignment:
| Q |
159 |
attgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatatt |
226 |
Q |
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||||| |||||||| |||||||||| ||| | |||||||| |||||||||||||||||||| ||||| |
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| T |
28419535 |
attgcagtcaaaagactttcaggaaattctgagcaaggatcgaaagaatttaaaaatgaagtcatatt |
28419602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 28432753 - 28432844
Alignment:
| Q |
146 |
agatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaat |
237 |
Q |
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|||||| ||||| |||| |||||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||| |||| |
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| T |
28432753 |
agatggacaagaagttgcagtcaaaagactttcaggaaattcttgtcaaggattgaaagaatttaaaaatgaagtcatattgtgtgctaaat |
28432844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 8765 - 8682
Alignment:
| Q |
147 |
gatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgt |
230 |
Q |
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| T |
8765 |
gatggacaagaaattgctgtcaaaaggctttcaaggagttctggacaaggacttaaagagtttaagaatgaagttatattatgt |
8682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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