View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_4 (Length: 526)
Name: NF10265_low_4
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 178 - 507
Target Start/End: Original strand, 17682164 - 17682493
Alignment:
| Q |
178 |
acgacaacaagtatctcgaccttcctcccatagccgcaaattatcgcatgattggcctcatttgggaacagatcgccatcctccgtaccggctcccccaa |
277 |
Q |
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| T |
17682164 |
acgataaccagtatatcggccttcctcccatagccgcaaatactggcatgatttaccacatttgggaacagatggccatcctccgtaccggctccccgaa |
17682263 |
T |
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| Q |
278 |
ggatcgttcagatgccgccgctgaacttctgtcactagcacacaacagcaacttttgcaaacattatctcatcgaggaaggaggggtggttcccattttg |
377 |
Q |
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| T |
17682264 |
ggatcgttcggacgccgccgcttcacttatgtcactagcagacgacatcaacttttacacatgtataatcatcctggaaggaggggtggttcccattttg |
17682363 |
T |
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| Q |
378 |
aagttgatgaaagaagggaacacacaagaaggaaaacaaactgctgcaagagccatcgctcttttcgtttctgacatagcagcggacaagcacgttgtct |
477 |
Q |
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| T |
17682364 |
aagttgatgaaagaagggaacacaaaagaaggaaaacaaactgctgcaagagccattgctcttttcgtttctgacatagcagcggacaagcaagttgtct |
17682463 |
T |
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| Q |
478 |
ccttcatttgcgaacaaatttccatccttc |
507 |
Q |
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| T |
17682464 |
ccttcatttgcgaacaaatttccatccttc |
17682493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 17682126 - 17682310
Alignment:
| Q |
2 |
caacgtttcctggctcctccgtacctcctccccccaaaacgacaaccagtatctcggccttcctcccataaccgcaaattatctcatcagtggcctcatt |
101 |
Q |
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| T |
17682126 |
caacttttcctggctcttccgtatctcctccctccacgacgataaccagtatatcggccttcctcccatagccgcaaatactggcatgatttaccacatt |
17682225 |
T |
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| Q |
102 |
tgggaaccgatcgccatcctcc---tcgactccccaaaggatcgttcggacgaggcagcttcagttctatcactatcacacgaca |
183 |
Q |
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| T |
17682226 |
tgggaacagatggccatcctccgtaccggctccccgaaggatcgttcggacgccgccgcttcacttatgtcactagcagacgaca |
17682310 |
T |
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