View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_low_40 (Length: 252)

Name: NF10265_low_40
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_low_40
NF10265_low_40
[»] chr4 (29 HSPs)
chr4 (1-235)||(17776637-17776871)
chr4 (157-224)||(4915681-4915748)
chr4 (158-224)||(39158102-39158168)
chr4 (151-224)||(193523-193595)
chr4 (155-224)||(3078916-3078985)
chr4 (158-224)||(51255743-51255809)
chr4 (161-222)||(36123470-36123531)
chr4 (167-224)||(38519799-38519856)
chr4 (159-224)||(54000696-54000761)
chr4 (160-233)||(56474763-56474836)
chr4 (161-233)||(149484-149556)
chr4 (161-220)||(2738280-2738339)
chr4 (160-207)||(4914905-4914952)
chr4 (161-224)||(13139148-13139211)
chr4 (161-224)||(21617183-21617246)
chr4 (161-224)||(33860647-33860710)
chr4 (161-227)||(14443198-14443264)
chr4 (158-224)||(20381348-20381414)
chr4 (159-205)||(21392568-21392614)
chr4 (158-224)||(51225533-51225599)
chr4 (159-224)||(17475320-17475385)
chr4 (155-224)||(40335783-40335851)
chr4 (159-227)||(1562542-1562609)
chr4 (160-224)||(29175226-29175289)
chr4 (160-224)||(39344988-39345052)
chr4 (160-224)||(40348793-40348856)
chr4 (160-224)||(41082317-41082381)
chr4 (160-224)||(51986041-51986104)
chr4 (167-227)||(52263884-52263944)
[»] scaffold0201 (1 HSPs)
scaffold0201 (161-224)||(8472-8535)
[»] chr6 (12 HSPs)
chr6 (159-224)||(2242030-2242095)
chr6 (160-224)||(3198959-3199023)
chr6 (159-220)||(8505786-8505847)
chr6 (159-224)||(15722512-15722576)
chr6 (159-227)||(5327597-5327665)
chr6 (161-220)||(11635547-11635606)
chr6 (159-233)||(17551378-17551452)
chr6 (167-224)||(13143390-13143447)
chr6 (161-222)||(34383868-34383929)
chr6 (160-224)||(20822876-20822940)
chr6 (167-235)||(29459099-29459167)
chr6 (156-212)||(34413087-34413142)
[»] chr5 (21 HSPs)
chr5 (161-229)||(3109590-3109658)
chr5 (158-224)||(19839994-19840060)
chr5 (155-227)||(7076574-7076645)
chr5 (158-233)||(11148508-11148583)
chr5 (157-212)||(14011313-14011368)
chr5 (161-227)||(15479469-15479534)
chr5 (154-224)||(27546056-27546126)
chr5 (167-224)||(6241627-6241684)
chr5 (160-224)||(8920077-8920141)
chr5 (160-224)||(33037519-33037582)
chr5 (167-227)||(35301596-35301656)
chr5 (159-227)||(38500941-38501008)
chr5 (154-224)||(32912031-32912101)
chr5 (159-224)||(611862-611927)
chr5 (159-220)||(1079965-1080025)
chr5 (159-224)||(13089790-13089855)
chr5 (150-207)||(41639760-41639817)
chr5 (159-235)||(24329980-24330055)
chr5 (167-227)||(32639049-32639108)
chr5 (161-224)||(39807722-39807785)
chr5 (160-224)||(41383362-41383426)
[»] chr3 (27 HSPs)
chr3 (144-227)||(35376557-35376639)
chr3 (159-227)||(27168687-27168755)
chr3 (158-224)||(33374489-33374555)
chr3 (160-224)||(10811134-10811198)
chr3 (159-227)||(54773759-54773827)
chr3 (161-224)||(14207266-14207329)
chr3 (161-224)||(14215014-14215077)
chr3 (153-220)||(19150331-19150398)
chr3 (156-227)||(45657775-45657846)
chr3 (161-227)||(30567965-30568031)
chr3 (167-233)||(32187147-32187213)
chr3 (158-224)||(34307549-34307615)
chr3 (159-224)||(5114076-5114140)
chr3 (161-198)||(9753230-9753267)
chr3 (159-224)||(26996314-26996379)
chr3 (161-222)||(29525864-29525925)
chr3 (162-235)||(31206849-31206921)
chr3 (160-221)||(32362932-32362993)
chr3 (167-212)||(35987373-35987418)
chr3 (155-224)||(36671023-36671091)
chr3 (161-230)||(37927207-37927276)
chr3 (162-227)||(47472330-47472394)
chr3 (161-206)||(51873393-51873438)
chr3 (160-224)||(24095414-24095478)
chr3 (160-224)||(27718794-27718858)
chr3 (155-227)||(28920055-28920127)
chr3 (154-233)||(35755977-35756054)
[»] chr2 (23 HSPs)
chr2 (162-233)||(7502427-7502498)
chr2 (159-224)||(30977887-30977952)
chr2 (162-224)||(34945099-34945160)
chr2 (167-224)||(9194435-9194492)
chr2 (159-227)||(6336250-6336318)
chr2 (160-224)||(9207589-9207652)
chr2 (154-222)||(38257675-38257743)
chr2 (160-227)||(12498641-12498708)
chr2 (161-224)||(18723594-18723657)
chr2 (161-224)||(22888830-22888892)
chr2 (161-224)||(36587477-36587539)
chr2 (158-224)||(9979093-9979159)
chr2 (159-233)||(27490730-27490803)
chr2 (159-224)||(1352386-1352451)
chr2 (155-224)||(2220987-2221056)
chr2 (159-213)||(17768064-17768114)
chr2 (159-227)||(7648390-7648457)
chr2 (161-225)||(13765400-13765464)
chr2 (167-227)||(14233724-14233784)
chr2 (160-224)||(18254218-18254281)
chr2 (183-227)||(27939179-27939223)
chr2 (161-233)||(42430649-42430721)
chr2 (159-223)||(44254597-44254661)
[»] chr1 (34 HSPs)
chr1 (159-224)||(30535989-30536054)
chr1 (160-233)||(9566960-9567033)
chr1 (155-224)||(35369694-35369762)
chr1 (159-224)||(48983676-48983741)
chr1 (160-220)||(43893256-43893316)
chr1 (161-224)||(649768-649831)
chr1 (161-224)||(5771756-5771819)
chr1 (155-222)||(31826944-31827011)
chr1 (157-224)||(33100804-33100870)
chr1 (157-224)||(37516520-37516587)
chr1 (158-224)||(10890054-10890120)
chr1 (158-224)||(12657219-12657284)
chr1 (155-201)||(19442500-19442546)
chr1 (157-227)||(30973548-30973618)
chr1 (160-222)||(45333569-45333630)
chr1 (158-224)||(51286375-51286441)
chr1 (159-224)||(4213070-4213135)
chr1 (159-224)||(8350205-8350269)
chr1 (159-224)||(15705070-15705135)
chr1 (158-227)||(24806227-24806296)
chr1 (151-224)||(32215992-32216064)
chr1 (155-224)||(44112448-44112516)
chr1 (159-224)||(48858821-48858886)
chr1 (161-230)||(50433769-50433838)
chr1 (159-224)||(52362480-52362545)
chr1 (167-227)||(835877-835936)
chr1 (159-235)||(11812385-11812460)
chr1 (159-235)||(21854462-21854537)
chr1 (159-199)||(26159439-26159479)
chr1 (167-227)||(29877303-29877363)
chr1 (160-224)||(36690581-36690644)
chr1 (160-224)||(36706682-36706745)
chr1 (158-230)||(37588677-37588749)
chr1 (161-221)||(40439851-40439911)
[»] chr7 (15 HSPs)
chr7 (159-227)||(22918447-22918514)
chr7 (160-224)||(33180718-33180782)
chr7 (161-224)||(32777715-32777778)
chr7 (161-224)||(34978296-34978359)
chr7 (158-224)||(12007194-12007260)
chr7 (160-222)||(37899223-37899285)
chr7 (159-224)||(47448824-47448889)
chr7 (152-223)||(35822984-35823055)
chr7 (158-224)||(32918989-32919054)
chr7 (161-223)||(43159584-43159646)
chr7 (167-233)||(48062062-48062128)
chr7 (152-221)||(2008869-2008938)
chr7 (160-224)||(13152592-13152655)
chr7 (155-199)||(37352104-37352148)
chr7 (160-224)||(37899322-37899386)
[»] scaffold0174 (1 HSPs)
scaffold0174 (167-233)||(34793-34859)
[»] scaffold0098 (1 HSPs)
scaffold0098 (154-224)||(49288-49357)
[»] chr8 (17 HSPs)
chr8 (158-224)||(33100477-33100543)
chr8 (159-221)||(33107878-33107940)
chr8 (160-224)||(3946239-3946303)
chr8 (168-224)||(33451571-33451627)
chr8 (157-224)||(1871622-1871689)
chr8 (161-224)||(35153015-35153078)
chr8 (161-224)||(45529254-45529317)
chr8 (155-201)||(17775460-17775506)
chr8 (159-221)||(28772135-28772197)
chr8 (162-224)||(40528749-40528811)
chr8 (159-224)||(10692437-10692501)
chr8 (167-224)||(23793098-23793155)
chr8 (155-224)||(34718109-34718178)
chr8 (159-224)||(41600307-41600372)
chr8 (161-233)||(7598708-7598780)
chr8 (160-224)||(31596947-31597011)
chr8 (155-227)||(41344675-41344746)
[»] scaffold0034 (1 HSPs)
scaffold0034 (159-224)||(22576-22641)
[»] scaffold0432 (1 HSPs)
scaffold0432 (160-224)||(6528-6592)
[»] scaffold0085 (1 HSPs)
scaffold0085 (167-207)||(22879-22919)
[»] scaffold0154 (1 HSPs)
scaffold0154 (160-223)||(9858-9920)
[»] scaffold0199 (1 HSPs)
scaffold0199 (167-227)||(8674-8733)
[»] scaffold0032 (1 HSPs)
scaffold0032 (160-200)||(17435-17475)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 17776871 - 17776637
Alignment:
Q  1 cataaacaacaagtggaatggaccaactcttgaaagtgttgaaactgcacaaaacgtatttctctgtttcaatttgctaaacgagctaccctgctcgctg 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |    
T  17776871 cataaacaacaagtggaatggaccaactcttgaaaatgttgaaactgcacaaaacatatttatctgtttcaatttgctaaacgagctaccctgctcgccg 17776772  T
Q  101 agctaattgacataaaccagaattttcatttgttgttatccacttttctcttaattttaagagaactgatatttgaacaatcattttgtcacaattttta 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  17776771 agctaattgacataaaccagaattttcatctgttgttatccacttttctcttaattttaagagaactgatatttgaataattattttgtgacaattttta 17776672  T
Q  201 tgacaacattctccctcatactcatataatgttct 235  Q
    |||||||||||||||||||||||||||||||||||    
T  17776671 tgacaacattctccctcatactcatataatgttct 17776637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 4915748 - 4915681
Alignment:
Q  157 ttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||| |||||||||||||  |||||||| ||||||||||||||||| ||||| ||||||||||    
T  4915748 ttaagagaaatgatatttgaacatccattttgtgacaatttttatgacaactttctctctcatactca 4915681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 39158102 - 39158168
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| ||||||||||||||||||||| | | ||||||| ||||||| ||||| ||||||||||    
T  39158102 taagagaaatgatatttgaacaatcattttttgataatttttgtgacaactttctctctcatactca 39158168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 193523 - 193595
Alignment:
Q  151 ttaattttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||| ||||||||| ||||||||||||| |||| |||| ||||||  ||||||||||||||||    
T  193523 ttaattataagagaaatgatatttgcacaatcattttgt-acaacttttgtgacaattttctccctcatactca 193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 3078985 - 3078916
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||| ||||||||| ||||||||||||| |||| |||| ||||||| ||||| ||||||||||    
T  3078985 ttttatgagaaatgatatttgtacaatcattttgtaacaacttttgtgacaactttctctctcatactca 3078916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 51255743 - 51255809
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  51255743 taagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactca 51255809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 36123531 - 36123470
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatact 222  Q
    ||||| ||||||||| ||||||||||| | |||| |||||||||||| ||||| ||||||||    
T  36123531 gagaaatgatatttgtacaatcattttataacaacttttatgacaactttctctctcatact 36123470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 38519799 - 38519856
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||||||||| |||||| | ||||||||| ||||||| ||||| ||||||||||    
T  38519799 tgatatttgaacaaccattttttgacaatttttgtgacaactttctctctcatactca 38519856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 54000696 - 54000761
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||| || ||| | ||||||||||| ||||| ||||| ||||||||||    
T  54000696 aagagaaatgatatttgaacaaccactttttgacaatttttataacaactttctctctcatactca 54000761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 56474836 - 56474763
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||||  ||||| || ||||||| || |||||    
T  56474836 agagaaatgatatttgaacaatcatttttttacaatttttgtgacaattttctctcttatactcacattatgtt 56474763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 149556 - 149484
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    ||||| ||||||||||||||||| ||| | | ||||||| ||||||| ||||| |||||||||| || |||||    
T  149556 gagaaatgatatttgaacaatcactttttgataatttttgtgacaactttctctctcatactcacattatgtt 149484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 2738339 - 2738280
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcata 220  Q
    ||||| ||||||||||||||||||||| | ||||||||| ||| ||| ||||| ||||||    
T  2738339 gagaaatgatatttgaacaatcattttttgacaatttttgtgataactttctctctcata 2738280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 4914905 - 4914952
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaac 207  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||||    
T  4914905 agagaaatgatatttgaacaactattttgtgacaatttttatgacaac 4914952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 13139148 - 13139211
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| |||||||||||||  |||||| | | ||||||||||||||| ||||| ||||||||||    
T  13139148 gagaaatgatatttgaacatccattttatgataatttttatgacaactttctctctcatactca 13139211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 21617183 - 21617246
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| |||||||||||||  |||||||| ||||||||| | ||||| ||||| ||||||||||    
T  21617183 gagaaatgatatttgaacatccattttgtgacaatttttgttacaactttctctctcatactca 21617246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 33860647 - 33860710
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| |||||||||||||  ||||| || ||||||||| ||||||| ||||| ||||||||||    
T  33860647 gagaaatgatatttgaacatccatttggtgacaatttttgtgacaactttctctctcatactca 33860710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 14443198 - 14443264
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||| ||||||||||||||||||||| | |||| |||| ||||||  ||||| |||||||| ||||    
T  14443198 gagaaatgatatttgaacaatcattttttgacaacttttgtgacaattttctctctcatacttatat 14443264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 20381348 - 20381414
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| | ||||||||||||||||||| | | ||||||||| ||||| ||||| ||||| ||||    
T  20381348 taagagaaattatatttgaacaatcattttttgataatttttataacaactttctctctcatgctca 20381414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 21392568 - 21392614
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgaca 205  Q
    ||||||| ||||||||||||||||||||||| | ||||||| |||||    
T  21392568 aagagaaatgatatttgaacaatcattttgtaataatttttgtgaca 21392614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 51225599 - 51225533
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| |||||||||||||   ||||||| | ||||||||||||||| ||||| || |||||||    
T  51225599 taagagaaatgatatttgaacatctattttgtgataatttttatgacaactttctctctaatactca 51225533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 17475320 - 17475385
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||||||| |||||| || | || |||| ||||||| ||||| ||||||||||    
T  17475320 aagagaaatgatatttgaacattcatttggtgataacttttttgacaactttctctctcatactca 17475385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 40335783 - 40335851
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||| ||||||||| ||||||||||| | ||||||||| ||||||| ||||| ||||| ||||    
T  40335783 ttttatgagaaatgatatttgtacaatcattttattacaattttt-tgacaactttctctctcatgctca 40335851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 1562609 - 1562542
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| ||||||||| |||| |||||| | |||| |||| ||||||| ||||| |||||||||||||    
T  1562609 aagagaaatgatatttgtacaaccattttctaacaactttt-tgacaactttctctctcatactcatat 1562542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 29175226 - 29175289
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||| |||||||||||||| | ||||||||| ||||||| || || ||||||||||    
T  29175226 agagaaatgatatatgaacaatcatttt-ttacaatttttgtgacaactttttctctcatactca 29175289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 39345052 - 39344988
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||  |||||||| |||||||||   ||||| ||||| ||||||||||    
T  39345052 agagaaatgatatttgaacatccattttgtgacaatttttgcaacaactttctctctcatactca 39344988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 40348793 - 40348856
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||||||||||||||| | | ||||||| ||||||  ||||| ||||||||||    
T  40348793 agagaaatgatatttgaacaatcatttt-ttataatttttgtgacaattttctctctcatactca 40348856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 41082317 - 41082381
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||||||| | |||| || | || |||||||||||| ||||| ||||||||||    
T  41082317 agagaaatgatatttgaacatttatttggtgataacttttatgacaactttctctctcatactca 41082381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 51986041 - 51986104
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||||||||| ||||| | | || |||||||||||| ||||| ||||||||||    
T  51986041 agagaaatgatatttgaacaattatttttt-ataacttttatgacaactttctctctcatactca 51986104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 52263944 - 52263884
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||||  ||||||||||| | | ||||||||| ||||| ||||| |||||||||||||    
T  52263944 tgatatttatacaatcattttttgataatttttataacaactttctctctcatactcatat 52263884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 8472 - 8535
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||    
T  8472 gagaaatgatatttgaacaatcattttttaacaatttttatgacaactttctctctcatactca 8535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 2242095 - 2242030
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||||||||||||||| | ||||||||| ||||||| ||||| ||||||||||    
T  2242095 aagagaaatgatatttgaacaatcattttttgacaatttttgtgacaactttctctctcatactca 2242030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 3198959 - 3199023
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||||||| |||||| || | ||||||||||||||| ||||| ||||||||||    
T  3198959 agagaaatgatatttgaacattcatttggtgataatttttatgacaactttctctctcatactca 3199023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 8505847 - 8505786
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcata 220  Q
    ||||||| ||||||||||||||||||||| | |||| |||| ||||||| ||||| ||||||    
T  8505847 aagagaaatgatatttgaacaatcattttttgacaacttttgtgacaactttctctctcata 8505786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 15722576 - 15722512
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||| ||||||||||||| |||| |||| ||||||| ||||| ||||||||||    
T  15722576 aagagaaatgatatttgtacaatcattttgtgacaactttt-tgacaaccttctctctcatactca 15722512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 5327665 - 5327597
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| |||||||||||||  ||||| || |||| |||||| ||||| ||||| |||||||||||||    
T  5327665 aagagaaatgatatttgaacatccatttagtgacaacttttataacaactttctctctcatactcatat 5327597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 11635606 - 11635547
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcata 220  Q
    ||||| ||||||||||||||||||||| | |||| |||| ||||||| ||||| ||||||    
T  11635606 gagaaatgatatttgaacaatcattttttgacaacttttgtgacaactttctctctcata 11635547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 17551452 - 17551378
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    ||||||| |||||||||||||| |||||| | |||| |||| | ||||| ||||| |||||||||| || |||||    
T  17551452 aagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacattatgtt 17551378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 13143447 - 13143390
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||||||| ||||||||| |||||||||   ||||| ||||| ||||||||||    
T  13143447 tgatatttgaacattcattttgtgacaatttttgcaacaactttctctctcatactca 13143390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 34383929 - 34383868
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatact 222  Q
    ||||| ||||||||||||| ||||||| | ||||||||| |||||||  |||| ||||||||    
T  34383929 gagaaatgatatttgaacattcattttttaacaatttttgtgacaaccctctctctcatact 34383868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 20822940 - 20822876
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||  |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  20822940 agagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactca 20822876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 29459167 - 29459099
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgttct 235  Q
    |||||||||||||| |||||||| |||| ||||| || ||| ||||| ||| |||||| || |||||||    
T  29459167 tgatatttgaacaaccattttgtgacaaattttaagataactttctctctcgtactcacattatgttct 29459099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 34413087 - 34413142
Alignment:
Q  156 tttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattct 212  Q
    |||||||||| ||||||||| ||||||||||||  ||||||||| ||||||| ||||    
T  34413087 tttaagagaaatgatatttgtacaatcattttgctacaattttt-tgacaactttct 34413142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 3109658 - 3109590
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataa 229  Q
    ||||| ||||||||| ||||||| ||||| |||| |||| ||||||||||||| |||||||||||||||    
T  3109658 gagaaatgatatttgtacaatcaatttgtgacaacttttgtgacaacattctctctcatactcatataa 3109590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 19840060 - 19839994
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| ||||||||||||| ||||||| | ||||||||| ||||||| ||||| ||||||||||    
T  19840060 taagagaaatgatatttgaacattcattttatgacaatttttgtgacaactttctctctcatactca 19839994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 7076645 - 7076574
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||||||| ||||||||||||||||||||| | | ||||||| ||||||  ||||| |||||||||||||    
T  7076645 ttttaagagaaatgatatttgaacaatcatttt-ttataatttttgtgacaattttctctctcatactcatat 7076574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 11148508 - 11148583
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    |||||||| ||||||||| ||||||| ||| | |||| |||| ||||||||||||| |||||||||| || |||||    
T  11148508 taagagaaatgatatttgtacaatcaatttttgacaacttttgtgacaacattctctctcatactcacattatgtt 11148583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 14011313 - 14011368
Alignment:
Q  157 ttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattct 212  Q
    ||||||||| ||||||||||||||||||||||| |||| |||| ||||||| ||||    
T  14011313 ttaagagaaatgatatttgaacaatcattttgtaacaacttttgtgacaactttct 14011368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 15479469 - 15479534
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||| ||||||||||||||||||||| | |||| |||||||||||| ||||| |||||||| ||||    
T  15479469 gagaaatgatatttgaacaatcatttt-ttacaacttttatgacaactttctctctcatacttatat 15479534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 27546056 - 27546126
Alignment:
Q  154 attttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||||||| ||||||||||||||||||||| | |||| |||| ||||||| || |  ||||||||||    
T  27546056 attttaagagaaatgatatttgaacaatcattttatgacaaattttgtgacaactttatttctcatactca 27546126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 6241627 - 6241684
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||||||| | ||||||| ||||||||||||||||| || || ||||||||||    
T  6241627 tgatatttgaacatttattttgtgacaatttttatgacaactttatctctcatactca 6241684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 8920077 - 8920141
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||  |||||||| |||| |||| ||||||| ||||| ||||||||||    
T  8920077 agagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactca 8920141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 33037519 - 33037582
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||| |||||| | |||| |||||||||||| ||||| ||||||||||    
T  33037519 agagaaatgatatttgaacaaccatttttt-acaacttttatgacaactttctctctcatactca 33037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 35301656 - 35301596
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    |||||||||||||| |||||||| ||||||||||||||||  ||||| |  ||||||||||    
T  35301656 tgatatttgaacaaccattttgtgacaatttttatgacaattttctctcgtatactcatat 35301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 38500941 - 38501008
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| ||||||||| |||| |||||||| ||||||||| ||||||| |||||  ||||||||||||    
T  38500941 aagagaaatgatatttgtacaaccattttgtgacaattttt-tgacaactttctctttcatactcatat 38501008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 32912031 - 32912101
Alignment:
Q  154 attttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||| ||||||| ||||||||||||| ||||||| | | ||||||| ||||||  ||||| ||||||||||    
T  32912031 atttaaagagaaatgatatttgaacattcattttatgataatttttgtgacaattttctctctcatactca 32912101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 611862 - 611927
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||||||||| | ||| | |||| |||| ||||||| ||||| ||||||||||    
T  611862 aagagaaatgatatttgaacaattactttttgacaacttttgtgacaactttctctctcatactca 611927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 1080025 - 1079965
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcata 220  Q
    ||||||| ||||||||||||||| ||||| | ||||||||| ||||||| ||||| ||||||    
T  1080025 aagagaaatgatatttgaacaattatttt-ttacaatttttgtgacaactttctctctcata 1079965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 13089855 - 13089790
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||| |||||| | |||| |||| ||||||| |||||  |||||||||    
T  13089855 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctttcatactca 13089790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 41639817 - 41639760
Alignment:
Q  150 cttaattttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaac 207  Q
    ||||| |||||||||| |||||| |||||||||||||| | |||| |||| |||||||    
T  41639817 cttaaatttaagagaaatgatatctgaacaatcatttttttacaacttttgtgacaac 41639760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 24330055 - 24329980
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgttct 235  Q
    ||||||| ||||||||| ||||| ||||||  |||| |||| | ||||| ||||| ||||||||||||| |||||||    
T  24330055 aagagaaatgatatttgtacaattattttggtacaacttttgt-acaactttctctctcatactcatattatgttct 24329980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 32639049 - 32639108
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||||| ||||||||||||| |||| |||| ||||||| ||||| |||||| ||||||    
T  32639049 tgatatttgtacaatcattttgt-acaaattttgtgacaactttctctctcatattcatat 32639108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 39807785 - 39807722
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacatt-ctccctcatactca 224  Q
    ||||| |||||||||||||| |||||| | ||||||||||||||||| || ||| ||||||||||    
T  39807785 gagaaatgatatttgaacaaccatttt-ttacaatttttatgacaactttactctctcatactca 39807722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 41383426 - 41383362
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||||||||||| |||| |||||||| | || |||| |||||||  |||| ||||||||||    
T  41383426 agagaactgatatttgtacaaccattttgtgataacttttttgacaaccctctctctcatactca 41383362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 35376639 - 35376557
Alignment:
Q  144 ttttctcttaattttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    |||||| |||| || ||||||| ||||||||| |||| |||||||| |||||||||| |||||| ||||| |||||||||||||    
T  35376639 ttttcttttaaattaaagagaaatgatatttgtacaaccattttgtgacaattttta-gacaactttctctctcatactcatat 35376557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 27168755 - 27168687
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| |||||||||||||| |||||| | | ||||||| ||||||| ||||| |||||||||||||    
T  27168755 aagagaaatgatatttgaacaaccattttttaataatttttgtgacaactttctctctcatactcatat 27168687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 33374489 - 33374555
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| ||||||||||| || |||||| | ||||||||||||| ||| ||||| ||||||||||    
T  33374489 taagagaaatgatatttgaataaccattttatgacaatttttatgataactttctctctcatactca 33374555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 10811134 - 10811198
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  10811134 agagaaatgatatttgaacaaccattttatgacaacttttgtgacaactttctctctcatactca 10811198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 54773827 - 54773759
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| |||||||||||||  ||||| || |||| |||||| ||||| ||||| |||||||||||||    
T  54773827 aagagaaatgatatttgaacatccatttagtgacaacttttataacaactttctctctcatactcatat 54773759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 14207329 - 14207266
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||||||||||||  ||||||| |||| |||| ||||||| ||||| ||||||||||    
T  14207329 gagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctctcatactca 14207266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 14215077 - 14215014
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||||||||||||  ||||||| |||| |||| ||||||| ||||| ||||||||||    
T  14215077 gagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctctcatactca 14215014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 19150398 - 19150331
Alignment:
Q  153 aattttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcata 220  Q
    |||||| |||||| ||||||||| ||||||||||| | |||| |||| ||||||| ||||| ||||||    
T  19150398 aatttttagagaaatgatatttgtacaatcattttttaacaacttttgtgacaactttctctctcata 19150331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 45657846 - 45657775
Alignment:
Q  156 tttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||| |||| ||||||||  ||||||||||| | ||||||||| ||||||| ||||| ||| |||||||||    
T  45657846 tttaatagaaatgatatttatacaatcattttctaacaatttttgtgacaacgttctctctcttactcatat 45657775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 30568031 - 30567965
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||| ||||||||||||| | ||||||| |||| |||||||||||| || ||  ||||||||||||    
T  30568031 gagaaatgatatttgaacatttattttgtgacaacttttatgacaactttttctttcatactcatat 30567965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 32187147 - 32187213
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    ||||||||| |||| |||||||| |||| |||||||||||| ||||| |||||| ||| || |||||    
T  32187147 tgatatttgtacaaccattttgtgacaacttttatgacaaccttctctctcatattcacattatgtt 32187213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 34307615 - 34307549
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| |||||||| |||||  ||||| | ||||||||||||||||| |||||  |||||||||    
T  34307615 taagagaaatgatatttaaacaacaattttttgacaatttttatgacaactttctctttcatactca 34307549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 5114076 - 5114140
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||| |||||| | ||||||||| ||||||| ||||| |||| |||||    
T  5114076 aagagaaatgatatttgaacaaccatttt-ttacaatttttttgacaactttctctctcacactca 5114140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 9753230 - 9753267
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttt 198  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  9753230 gagaaatgatatttgaacaatcattttgtgacaatttt 9753267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 26996314 - 26996379
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||||||| |||||| || |||| |||| | ||||| ||||| ||||||||||    
T  26996314 aagagaaatgatatttgaacattcatttagtaacaacttttgtaacaactttctctctcatactca 26996379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 29525864 - 29525925
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatact 222  Q
    ||||| |||||||||||||| ||| || | |||||| |||||||||| ||||| ||||||||    
T  29525864 gagaaatgatatttgaacaaccatcttttaacaattcttatgacaactttctctctcatact 29525925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 31206921 - 31206849
Alignment:
Q  162 agaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgttct 235  Q
    |||| ||||||||| ||||||||||||| |||| |||| ||||||| ||||  |||||||| | ||||||||||    
T  31206921 agaaatgatatttgtacaatcattttgtgacaaatttt-tgacaactttctttctcatacttacataatgttct 31206849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 32362932 - 32362993
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatac 221  Q
    |||||| |||||||||||||| |||||| | |||| |||||||||||| || || |||||||    
T  32362932 agagaaatgatatttgaacaaccattttttgacaacttttatgacaactttatctctcatac 32362993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 35987418 - 35987373
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattct 212  Q
    ||||||||||||||||||||  | ||||||||||||||||| ||||    
T  35987418 tgatatttgaacaatcatttgcttacaatttttatgacaaccttct 35987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 36671091 - 36671023
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||| |||||| |||||||||||||| |||||| | ||||||||| ||||||| || || ||||||||||    
T  36671091 tttttagagaaatgatatttgaacaaccatttt-ttacaatttttgtgacaactttttctctcatactca 36671023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 37927276 - 37927207
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataat 230  Q
    ||||| |||||||||||||  ||||| || |||| |||| ||||||| ||||| |||||||||| |||||    
T  37927276 gagaaatgatatttgaacatccatttggtgacaacttttgtgacaactttctctctcatactcacataat 37927207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 47472330 - 47472394
Alignment:
Q  162 agaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    |||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| |||||||||||||    
T  47472330 agaaatgatatttgaacaaccatttttt-acaacttttgtgacaactttctctctcatactcatat 47472394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 51873393 - 51873438
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaa 206  Q
    ||||| ||||||||||||||  ||||||| ||||||||||||||||    
T  51873393 gagaaatgatatttgaacaactattttgtgacaatttttatgacaa 51873438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 24095478 - 24095414
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||  |||||| | | ||||||| ||||||| ||||| ||||||||||    
T  24095478 agagaaatgatatttgaacatccattttatgataatttttgtgacaactttctctctcatactca 24095414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 27718858 - 27718794
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||| ||| | ||||||||||| |||| |||| ||||||| ||||| ||||||||||    
T  27718858 agagaaatgatacttgtataatcattttgtaacaacttttgtgacaactttctctctcatactca 27718794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 28920127 - 28920055
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||||||| ||||||||| ||||  ||||  | | ||||||| ||||||| ||||| |||||||||||||    
T  28920127 ttttaagagaaatgatatttgtacaactatttgataataatttttgtgacaactttctctctcatactcatat 28920055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 35755977 - 35756054
Alignment:
Q  154 attttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    |||| ||||||| |||||||||||||| |||||| | | ||||||||  ||||| |||||  ||||||||| ||||||||    
T  35755977 atttaaagagaaatgatatttgaacaaccattttatgataattttta--acaactttctctttcatactcacataatgtt 35756054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 7502498 - 7502427
Alignment:
Q  162 agaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    |||| ||||||||| |||| |||||| | ||||||||| ||||||| ||||| |||||||||||||||||||    
T  7502498 agaaatgatatttgtacaaccattttttgacaatttttgtgacaactttctctctcatactcatataatgtt 7502427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 30977887 - 30977952
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||  |||||||| |||| |||||||||||| ||||| ||||||||||    
T  30977887 aagagaaatgatatttgaacatccattttgtgacaacttttatgacaactttctctctcatactca 30977952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 34945160 - 34945099
Alignment:
Q  162 agaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||| ||||||||||||||||||||| | | ||||||||||||||| ||||| ||||||||||    
T  34945160 agaaatgatatttgaacaatcatttttt-ataatttttatgacaactttctctctcatactca 34945099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 9194435 - 9194492
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||||||||  |||||||| |||| |||||||||||| ||||| ||||||||||    
T  9194435 tgatatttgaacatccattttgtgacaacttttatgacaactttctctctcatactca 9194492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 6336250 - 6336318
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| ||||||||| |||| |||||| | |||| |||| ||||||| ||||| |||||||||||||    
T  6336250 aagagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctctcatactcatat 6336318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 9207589 - 9207652
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||||||||||||||| | |||| |||| ||||||| ||||| ||||||||||    
T  9207589 agagaaatgatatttgaacaatcatttt-ttacaacttttgtgacaactttctctctcatactca 9207652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 38257743 - 38257675
Alignment:
Q  154 attttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatact 222  Q
    |||||||||||| |||||||| |||| | ||||||| ||||||||||||| ||| || || ||||||||    
T  38257743 attttaagagaaatgatatttaaacatttattttgtgacaatttttatgataactttttctctcatact 38257675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 12498708 - 12498641
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    |||||| |||||||||||||  ||||| || ||||||||| ||||||| || || |||||||||||||    
T  12498708 agagaaatgatatttgaacatccatttggtaacaatttttgtgacaactttttctctcatactcatat 12498641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 18723594 - 18723657
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| |||||||||||||  |||||||| ||||||||| | ||||| ||||| ||||||||||    
T  18723594 gagaaatgatatttgaacatccattttgtgacaatttttgttacaactttctctctcatactca 18723657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 22888892 - 22888830
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| |||||||||||||| |||||| | ||||||||| ||||||| ||||| ||||||||||    
T  22888892 gagaaatgatatttgaacaaccatttt-tgacaatttttgtgacaactttctctctcatactca 22888830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 36587539 - 36587477
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| |||||||||||||| |||||| | ||||||||| ||||||| ||||| ||||||||||    
T  36587539 gagaaatgatatttgaacaaccattttttgacaattttt-tgacaactttctctctcatactca 36587477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 9979093 - 9979159
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| ||||||||| |||| || ||| ||||||||||| |||||||  |||| ||||||||||    
T  9979093 taagagaaatgatatttgtacaaccactttttcacaatttttgtgacaaccatctctctcatactca 9979159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 27490803 - 27490730
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    ||||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| |||| |||||||| |||||    
T  27490803 aagagaaatgatatttgaacaaccatttt-tgacaacttttgtgacaactttctctctcacactcatattatgtt 27490730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 1352386 - 1352451
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||||||||||| ||| | |||| |||||||| ||| |||||  |||||||||    
T  1352386 aagagaaatgatatttgaacaatcaatttttgacaacttttatgaaaactttctctttcatactca 1352451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 2220987 - 2221056
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||||| | |||||||||||   ||||||| ||||||||| ||| ||| ||||| ||||||||||    
T  2220987 ttttaagagaaataatatttgaacatctattttgtgacaatttttgtgataactttctctctcatactca 2221056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 17768114 - 17768064
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctc 213  Q
    ||||||| ||||||||||||||||||    ||||||||||||||||||| |||||    
T  17768114 aagagaaatgatatttgaacaatcat----tcacaatttttatgacaactttctc 17768064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 7648390 - 7648457
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| |||||||||||||  ||||| || ||||||||| ||||||| || || |||||||||||||    
T  7648390 aagagaaatgatatttgaacatccattt-gtgacaatttttgtgacaactttttctctcatactcatat 7648457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 13765400 - 13765464
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcat 225  Q
    ||||| |||||||||||||  |||||| | |||| |||| ||||||| ||||| |||||||||||    
T  13765400 gagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcat 13765464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 14233784 - 14233724
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    |||||||||||||  |||||||| |||| |||| ||||||  ||||| |||||||||||||    
T  14233784 tgatatttgaacatccattttgtgacaacttttgtgacaaatttctctctcatactcatat 14233724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 18254281 - 18254218
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  18254281 agagaaatgatatttgaacaaccatttt-ttacaacttttgtgacaactttctctctcatactca 18254218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 27939179 - 27939223
Alignment:
Q  183 attttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| ||||||||||||| |||||| || |||||||||||||    
T  27939179 attttgtgacaatttttatgataacattatctctcatactcatat 27939223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 42430649 - 42430721
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    ||||| || |||||| ||||  ||||||| |||| ||||||||||||||| || |||||||||| || |||||    
T  42430649 gagaaatggtatttgtacaacaattttgtaacaacttttatgacaacattttctctcatactcacattatgtt 42430721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 44254597 - 44254661
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactc 223  Q
    ||||||| ||||||||||||| ||||| ||| |||| |||| | ||||| ||||| |||||||||    
T  44254597 aagagaaatgatatttgaacattcattctgtgacaacttttgttacaactttctctctcatactc 44254661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 30535989 - 30536054
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||| ||||||||||| | ||||||||| ||||||| ||||| ||||||||||    
T  30535989 aagagaaatgatatttgtacaatcattttttaacaatttttgtgacaactttctctctcatactca 30536054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 9567033 - 9566960
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    |||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| |||||||||| || |||||    
T  9567033 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattatgtt 9566960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 35369694 - 35369762
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||| ||||||| ||||  ||||||||||    
T  35369694 ttttaagagaaatgatatttgaacaatcatttt-ttacaacttttgtgacaactttctatctcatactca 35369762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 48983741 - 48983676
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  48983741 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactca 48983676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 43893256 - 43893316
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcata 220  Q
    |||||| |||||||||||||  ||||||||||||| |||||||||||  ||||| ||||||    
T  43893256 agagaaatgatatttgaacatccattttgtcacaacttttatgacaattttctctctcata 43893316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 649768 - 649831
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  649768 gagaaatgatatttgaacaaccatttttttacaacttttgtgacaactttctctctcatactca 649831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 5771819 - 5771756
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||||||||||||||| ||| | | ||||||| ||||||| ||||| ||||||||||    
T  5771819 gagaaatgatatttgaacaatcactttttgataatttttgtgacaactttctctctcatactca 5771756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 31826944 - 31827011
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatact 222  Q
    |||| ||||||  ||||||||||||| |||||| | ||||||||| ||||||| ||||| ||||||||    
T  31826944 tttttagagaaaggatatttgaacaaccatttttttacaatttttgtgacaactttctctctcatact 31827011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 33100804 - 33100870
Alignment:
Q  157 ttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  33100804 ttaagagaaatgatatttgaacaaccatttt-ttacaacttttttgacaactttctctctcatactca 33100870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 37516520 - 37516587
Alignment:
Q  157 ttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||| ||||||||  ||||||||||||| ||||||| ||||||||  || || ||||||||||    
T  37516520 ttaagagaaatgatattttgacaatcattttgtaacaatttatatgacaattttatctctcatactca 37516587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 10890120 - 10890054
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| |||||||||||||  |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  10890120 taagagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactca 10890054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 12657219 - 12657284
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| ||||||||||||||||||||| | |||||||||  || ||| ||||| ||||||||||    
T  12657219 taagagaaatgatatttgaacaatcatttt-ttacaatttttgagataactttctctctcatactca 12657284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 19442500 - 19442546
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttat 201  Q
    |||| |||||| ||||||||||||||||||||||| |||| ||||||    
T  19442500 tttttagagaaatgatatttgaacaatcattttgtgacaacttttat 19442546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 30973548 - 30973618
Alignment:
Q  157 ttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||||| ||||||||| |||| | |||| | ||||||||| ||||||| |||||  ||||||||||||    
T  30973548 ttaagagaaatgatatttgtacaacccttttctaacaatttttgtgacaactttctctttcatactcatat 30973618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 45333569 - 45333630
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatact 222  Q
    |||||| ||||||||||||||||||||| | |||| |||| ||||||| ||||| ||||||||    
T  45333569 agagaaatgatatttgaacaatcatttt-ttacaacttttgtgacaactttctctctcatact 45333630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 51286441 - 51286375
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| ||||||||||||| | ||||| | |||| |||| ||||||| ||||| ||||||||||    
T  51286441 taagagaaatgatatttgaacatttattttatgacaacttttgtgacaactttctctctcatactca 51286375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 4213070 - 4213135
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||| |||||| | | || |||| ||||||| ||||| ||||||||||    
T  4213070 aagagaaatgatatttgaacaaccattttttgataacttttgtgacaactttctctctcatactca 4213135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 8350269 - 8350205
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  8350269 aagagaaatgatatttgaacaaccatttt-ttacaacttttgtgacaactttctctctcatactca 8350205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 15705135 - 15705070
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||  |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  15705135 aagagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactca 15705070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 24806296 - 24806227
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    |||||||| ||||||||||| || || ||| | |||| |||| ||||||| ||||| |||||||||||||    
T  24806296 taagagaaatgatatttgaataaccactttttgacaacttttgtgacaactttctctctcatactcatat 24806227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 32215992 - 32216064
Alignment:
Q  151 ttaattttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||||||||| ||||||||| ||||| ||||| | | || ||||| |||||| ||||| ||||||||||    
T  32215992 ttaattttaagagaaatgatatttgtacaataattttttaataaatttta-gacaactttctctctcatactca 32216064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 44112448 - 44112516
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||||| ||||||||| |||| || ||| | ||||||||| ||||||| ||||| ||||||||||    
T  44112448 ttttaagagaaatgatatttgtacaaccactttattacaattttt-tgacaactttctctctcatactca 44112516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 48858821 - 48858886
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||| || ||| | |||| |||| ||||||| ||||| ||||||||||    
T  48858821 aagagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatactca 48858886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 50433769 - 50433838
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataat 230  Q
    ||||| |||||||||||||   |||| ||||||| |||||||||||| ||||| || ||||||| |||||    
T  50433769 gagaaatgatatttgaacatcgatttggtcacaacttttatgacaactttctctcttatactcacataat 50433838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 52362480 - 52362545
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||  |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  52362480 aagagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactca 52362545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 835877 - 835936
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||||| ||||||||||||| ||||||||| | ||||| ||||| ||||||| |||||    
T  835877 tgatatttgtacaatcattttgttacaatttttgt-acaactttctctctcatacacatat 835936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 11812385 - 11812460
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgttct 235  Q
    ||||||| ||||| ||| ||||||||||||| ||||||||| ||||||| || |  |||||||||| || |||||||    
T  11812385 aagagaaatgatagttgtacaatcattttgtgacaattttt-tgacaactttatttctcatactcacatgatgttct 11812460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 21854537 - 21854462
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgttct 235  Q
    ||||||| ||||||||| ||||| ||||||  |||| |||| | ||||| ||||| ||||||||||||| |||||||    
T  21854537 aagagaaatgatatttgtacaattattttggtacaacttttgt-acaactttctctctcatactcatattatgttct 21854462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 26159439 - 26159479
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaattttt 199  Q
    ||||||| ||||||||||||||||||||| | |||||||||    
T  26159439 aagagaaatgatatttgaacaatcattttttgacaattttt 26159479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 29877303 - 29877363
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||||| |||| |||||| | |||| | |||||||||| ||||| |||||||||||||    
T  29877303 tgatatttgtacaaccattttctaacaactcttatgacaactttctctctcatactcatat 29877363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 36690644 - 36690581
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||| |||| || ||| ||||||||||| ||||||| ||||| ||||||||||    
T  36690644 agagaaatgatatttgtacaaccaatttctcacaattttt-tgacaactttctctctcatactca 36690581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 36706745 - 36706682
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||| |||| || ||| ||||||||||| ||||||| ||||| ||||||||||    
T  36706745 agagaaatgatatttgtacaaccaatttctcacaattttt-tgacaactttctctctcatactca 36706682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 37588749 - 37588677
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataat 230  Q
    |||||||| ||||||||||||| | ||||||| |||| |||| | ||||| |||||  ||||||||| |||||    
T  37588749 taagagaaatgatatttgaacatttattttgtgacaacttttgttacaactttctctttcatactcacataat 37588677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 40439911 - 40439851
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatac 221  Q
    ||||| ||||| |||||||| |||||| | |||| |||||||||||| ||||| |||||||    
T  40439911 gagaaatgatacttgaacaaccattttttgacaacttttatgacaactttctctctcatac 40439851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 22918514 - 22918447
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||| |||||||||||||| |||||| | |||||||||||||| || ||||| |||||||||||||    
T  22918514 aagagaaatgatatttgaacaaccatttttt-acaatttttatgactactttctctctcatactcatat 22918447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 33180782 - 33180718
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||||||| ||||||||| |||| |||||||||||  ||||| ||||||||||    
T  33180782 agagaaatgatatttgaacattcattttgtgacaacttttatgacaattttctctctcatactca 33180718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 32777778 - 32777715
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| |||||||||||||| |||||| | |||| |||||||||||| ||||| ||||||||||    
T  32777778 gagaaatgatatttgaacaaccattttttgacaacttttatgacaactttctctctcatactca 32777715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 34978296 - 34978359
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||||||||||||||| ||| | ||||||||| ||||||| ||||| ||||||||||    
T  34978296 gagaaatgatatttgaacaatcactttttgacaatttttgtgacaactttctctctcatactca 34978359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 12007260 - 12007194
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  12007260 taagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactca 12007194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 37899285 - 37899223
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatact 222  Q
    |||||| |||||||||||||  |||||||| ||||||||| ||||||| ||||| ||||||||    
T  37899285 agagaaatgatatttgaacatccattttgtgacaatttttgtgacaactttctctctcatact 37899223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 47448824 - 47448889
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  47448824 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactca 47448889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 35823055 - 35822984
Alignment:
Q  152 taattttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactc 223  Q
    ||||| |||||||| ||||||||| |||  |||||| | ||||||||||||||||| ||||| |||| ||||    
T  35823055 taattataagagaaatgatatttgtacatccattttctaacaatttttatgacaactttctctctcacactc 35822984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 32919054 - 32918989
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| ||||||||  ||||||||||||| ||||||||| |||||||||| |  ||||||||||    
T  32919054 taagagaaatgatatttatacaatcattttgtgacaattttt-tgacaacattatttctcatactca 32918989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 43159646 - 43159584
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactc 223  Q
    ||||| |||||||||||||| |||||| | ||||||||| ||||||| ||||  |||||||||    
T  43159646 gagaaatgatatttgaacaaccattttttaacaatttttgtgacaactttctatctcatactc 43159584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 48062062 - 48062128
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    ||||||||||||||||||||| | |||| |||| | ||||| ||||| || |||||||||| |||||    
T  48062062 tgatatttgaacaatcatttttttacaacttttgtaacaactttctctcttatactcatattatgtt 48062128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 2008938 - 2008869
Alignment:
Q  152 taattttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatac 221  Q
    ||||||| |||||| |||||||||||||| || ||| | |||| |||| ||||||| ||||| |||||||    
T  2008938 taatttttagagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatac 2008869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 13152592 - 13152655
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  13152592 agagaaatgatatttgaacaaccatttt-tgacaacttttgtgacaactttctctctcatactca 13152655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 37352104 - 37352148
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaattttt 199  Q
    ||||||||||| |||||||||||||| |||||| | |||||||||    
T  37352104 ttttaagagaaatgatatttgaacaaccattttttgacaattttt 37352148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 37899322 - 37899386
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||  |||||||| |||| |||| ||||||| || || ||||||||||    
T  37899322 agagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttatctctcatactca 37899386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 34859 - 34793
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    ||||||||| ||||| | ||||| ||||||||||||||||| ||||| |||||||||| || |||||    
T  34859 tgatatttgtacaattaatttgtgacaatttttatgacaactttctctctcatactcacattatgtt 34793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 49288 - 49357
Alignment:
Q  154 attttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||||||| |||||||||||||| |||||| | | || |||||||||||| ||||| ||||||||||    
T  49288 attttaagagaaatgatatttgaacaaccatttt-ttataacttttatgacaactttctctctcatactca 49357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 33100543 - 33100477
Alignment:
Q  158 taagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||| |||||||||||||| |||||| | |||| |||| ||||||| ||||| ||||||||||    
T  33100543 taagagaaatgatatttgaacaaccattttataacaacttttgtgacaactttctctctcatactca 33100477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 33107940 - 33107878
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatac 221  Q
    ||||||| |||||||||||||| || ||| | |||| |||||||||||| |||||||||||||    
T  33107940 aagagaaatgatatttgaacaaccactttttgacaacttttatgacaactttctccctcatac 33107878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 3946239 - 3946303
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||  |||||||| |||| |||| ||||||| ||||| ||||||||||    
T  3946239 agagaaatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactca 3946303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 33451627 - 33451571
Alignment:
Q  168 gatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||||||||||||||| | |||| |||| ||||||| ||||| ||||||||||    
T  33451627 gatatttgaacaatcattttttgacaacttttgtgacaactttctctctcatactca 33451571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 1871689 - 1871622
Alignment:
Q  157 ttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||||| |||||||| ||||  ||||| || |||| |||| ||||||||||||| ||||||||||    
T  1871689 ttaagagaaatgatattttaacatccatttggtgacaaattttgtgacaacattctctctcatactca 1871622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 35153015 - 35153078
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||||||||||||||||||||| ||||||||| | ||||| || |  ||||||||||    
T  35153015 gagaaatgatatttgaacaatcattttgtaacaatttttgttacaactttttatctcatactca 35153078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 45529317 - 45529254
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||||||||||| |||||| || ||||||||| | ||||| ||||| ||||||||||    
T  45529317 gagaaatgatatttgaacattcatttagtgacaatttttgtaacaactttctctctcatactca 45529254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 17775506 - 17775460
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttat 201  Q
    |||| |||||| ||||||||||||||||||||||| |||| ||||||    
T  17775506 tttttagagaaatgatatttgaacaatcattttgtgacaacttttat 17775460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 28772197 - 28772135
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatac 221  Q
    ||||||| |||||||||||||| |||||| | ||||||||| ||| ||| ||||| |||||||    
T  28772197 aagagaaatgatatttgaacaaccattttttgacaatttttgtgataactttctctctcatac 28772135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 40528749 - 40528811
Alignment:
Q  162 agaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||| ||||||||||||||  ||||||| |||| |||||||||||| |||||  |||||||||    
T  40528749 agaaatgatatttgaacaactattttgtgacaacttttatgacaactttctctttcatactca 40528811  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 10692437 - 10692501
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||||||||||||||| | | ||||||| ||||||| || || ||||||||||    
T  10692437 aagagaaatgatatttgaacaatcatttt-ttataatttttgtgacaactttatctctcatactca 10692501  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 23793155 - 23793098
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||||||||||  |||||||| |||| || | ||||||||||||| ||||||||||    
T  23793155 tgatatttgaacatccattttgtgacaacttatgtgacaacattctctctcatactca 23793098  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 34718109 - 34718178
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||| ||||| |||||||||||||  |||||||| |||| |||| | ||||| ||||| ||||||||||    
T  34718109 ttttatgagaaatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatactca 34718178  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 41600307 - 41600372
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||||||| ||||||  | |||| |||| ||||||| ||||| ||||||||||    
T  41600307 aagagaaatgatatttgaacattcatttattgacaacttttgtgacaactttctctctcatactca 41600372  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 7598708 - 7598780
Alignment:
Q  161 gagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatataatgtt 233  Q
    ||||| |||||||||||||| |||||| | |||| |||| |||| || ||||| |||||||||| || |||||    
T  7598708 gagaaatgatatttgaacaaccattttttgacaacttttgtgaccactttctctctcatactcacattatgtt 7598780  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 31596947 - 31597011
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| |||||||||||||  |||||| | ||||||||| |||||||  |||| ||||||||||    
T  31596947 agagaaatgatatttgaacatccattttatgacaatttttgtgacaactctctctctcatactca 31597011  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 41344746 - 41344675
Alignment:
Q  155 ttttaagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||| ||||| ||||||||| ||||||| ||||| | || |||| ||||||| ||||| |||||||||||||    
T  41344746 ttttatgagaaatgatatttgtacaatcagtttgtgataactttt-tgacaaccttctctctcatactcatat 41344675  T

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Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 22576 - 22641
Alignment:
Q  159 aagagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    ||||||| ||||||||||||| ||||||||| |||  |||||||| ||||||||  ||||||||||    
T  22576 aagagaaatgatatttgaacattcattttgtgacagcttttatgataacattctttctcatactca 22641  T

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Target: scaffold0432 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 6592 - 6528
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactca 224  Q
    |||||| ||||||||||||||||||||| | |||| |||| ||||||| || || ||||||||||    
T  6592 agagaaatgatatttgaacaatcattttttaacaacttttgtgacaactttatctctcatactca 6528  T

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Target: scaffold0085 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 22919 - 22879
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaac 207  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  22919 tgatatttgaacaatcattttgtgacaacttttatgacaac 22879  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 9920 - 9858
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactc 223  Q
    |||||| ||||||||| ||||||||||| ||||||||||| ||||||  ||||| |||||||||    
T  9920 agagaaatgatatttgtacaatcattttttcacaattttt-tgacaattttctctctcatactc 9858  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 8674 - 8733
Alignment:
Q  167 tgatatttgaacaatcattttgtcacaatttttatgacaacattctccctcatactcatat 227  Q
    ||||||||||||||||||||| | |||| |||| ||||||| |||||  ||||||||||||    
T  8674 tgatatttgaacaatcatttt-ttacaacttttgtgacaactttctctttcatactcatat 8733  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 17435 - 17475
Alignment:
Q  160 agagaactgatatttgaacaatcattttgtcacaattttta 200  Q
    |||||| ||||||||| |||| |||||||||||||||||||    
T  17435 agagaaatgatatttgtacaaccattttgtcacaattttta 17475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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