View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_44 (Length: 250)
Name: NF10265_low_44
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8723660 - 8723897
Alignment:
| Q |
1 |
aatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaaaaggacaactaagaatggtttttggaaagc |
100 |
Q |
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| T |
8723660 |
aatctgatgaccaagaatggtttttcttgtgccctattgaatacaagtatgcaaagagtaaaaggtttaaaaggacaactaataatggtttttggaaagc |
8723759 |
T |
|
| Q |
101 |
tactggaatggaccgtaacattaggattaggggtaccaatgaagttattgggattaagaagacgcttgtttaccatgaaaatcctgttcctggtgttaag |
200 |
Q |
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| T |
8723760 |
tactggaatggaccgtaacattaggattaggggtaccaatgaagttattgggattaagaagactcttgtttaccatgagaatcatgttcctggtgttaag |
8723859 |
T |
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| Q |
201 |
accaattggatcattcatgagtatcatgatgtcacctt |
238 |
Q |
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| T |
8723860 |
accaattggatcattcatgagtatcatgatgtcacctt |
8723897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8740301 - 8740540
Alignment:
| Q |
1 |
aatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaaaaggacaactaagaatggtttttggaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
8740301 |
aatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaaaaggacaacgaataatggtttttggaaagc |
8740400 |
T |
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| Q |
101 |
tactggaatggaccgtaacattaggattaggggtaccaatgaagttattgggattaagaagacgcttgtttaccatgaaaatcctgttcctggtgttaag |
200 |
Q |
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| T |
8740401 |
tactggaaatgatcgtagcattaagattagaggtaccaataaaattattgggactaagaagactcttgtttatcatgaagatcctgttcctggtgttaag |
8740500 |
T |
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| Q |
201 |
accaattggatcattcatgagtatcatgatgtcacctttg |
240 |
Q |
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| T |
8740501 |
actaattggatcattcatgaatatcatgatgccatctttg |
8740540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14372502 - 14372263
Alignment:
| Q |
1 |
aatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaaaaggacaactaagaatggtttttggaaagc |
100 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
14372502 |
aatcagatgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaaaaggacaacaaaaaatggtttttggaaagc |
14372403 |
T |
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| Q |
101 |
tactggaatggaccgtaacattaggattaggggtaccaatgaagttattgggattaagaagacgcttgtttaccatgaaaatcctgttcctggtgttaag |
200 |
Q |
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| T |
14372402 |
tactggaaaggaccggaagattaaggttaggggtagcaataatattattgggattaagaaaactcttgtttactataatggtcgtgttcctggtgttaaa |
14372303 |
T |
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| Q |
201 |
accaattggatcattcatgagtatcatgatgtcacctttg |
240 |
Q |
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| T |
14372302 |
agcagccgggtgattcatgaatatcatgataccacctttg |
14372263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8705225 - 8705464
Alignment:
| Q |
1 |
aatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaaaaggacaactaagaatggtttttggaaagc |
100 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||| || |||||||| ||||||||||||||||| |||||||| || | ||||||||||||||| |
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| T |
8705225 |
aatcagatgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaagaggacaacaaatactggtttttggaaagc |
8705324 |
T |
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| Q |
101 |
tactggaatggaccgtaacattaggattaggggtaccaatgaagttattgggattaagaagacgcttgtttaccatgaaaatcctgttcctggtgttaag |
200 |
Q |
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| T |
8705325 |
tactggtaaggaccggaagattaaggttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggtcgtgttcctggtgttaaa |
8705424 |
T |
|
| Q |
201 |
accaattggatcattcatgagtatcatgatgtcacctttg |
240 |
Q |
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| T |
8705425 |
agcagctgggtgattcatgaatatcatgataccacctttg |
8705464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 8738768 - 8738823
Alignment:
| Q |
15 |
gaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaa |
70 |
Q |
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||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||| |
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| T |
8738768 |
gaatggtttttcttgtgtccttgtgattacaagtacgcaaagagtaaaaagtttaa |
8738823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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