View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_45 (Length: 249)
Name: NF10265_low_45
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 33120958 - 33120722
Alignment:
| Q |
4 |
atcaccgaacttaatagtttggtgaaaatcacgttgcaagtgattgaatttatacttgaattggattaccttaatgataggtatgacacaaaggttgttc |
103 |
Q |
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| T |
33120958 |
atcaccgagcttaatagtttggtgaaaatcacgttgcaagtgattgaatttatacttgaattggattaccttaatgataggtatgacacaaaggtcgttc |
33120859 |
T |
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| Q |
104 |
ctgctttggaacttgcatatgaacaaattcctgttgatgtttactggaccatcatcactattgctgcaattgttactcagttagattgcctcatcactga |
203 |
Q |
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| T |
33120858 |
ctgctttggaacttgcatatgaacaaattcctgttgatgtttactggaccatcatcactattgctgcaattgttactcagttagattgcctcatcactga |
33120759 |
T |
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| Q |
204 |
atcgtaagtttaattaaataatattgcatattcatct |
240 |
Q |
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| T |
33120758 |
atcgtaagttttattaattaatatcgtttattcatct |
33120722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 33139345 - 33139440
Alignment:
| Q |
124 |
gaacaaattcctgttgatgtttactggaccatcatcactattgctgcaattgttactcagttagattgcctcatcactgaatcgtaagtttaatta |
219 |
Q |
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| T |
33139345 |
gaacaattccctgttgatgtatattgggttatcatcaccattgttgcaattgttactcagtttgaatgtctcaccactaattcgtaagtttaatta |
33139440 |
T |
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