View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_low_49 (Length: 243)

Name: NF10265_low_49
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_low_49
NF10265_low_49
[»] chr3 (4 HSPs)
chr3 (18-212)||(11650542-11650736)
chr3 (33-166)||(52641360-52641496)
chr3 (68-159)||(15990236-15990327)
chr3 (78-159)||(40888766-40888847)
[»] chr7 (10 HSPs)
chr7 (22-145)||(46002764-46002887)
chr7 (21-154)||(31211093-31211226)
chr7 (18-94)||(46002688-46002764)
chr7 (68-167)||(29587564-29587663)
chr7 (174-242)||(11036743-11036811)
chr7 (68-158)||(9745123-9745212)
chr7 (69-159)||(13167881-13167971)
chr7 (59-159)||(10530198-10530297)
chr7 (79-156)||(8311731-8311808)
chr7 (147-176)||(48576313-48576342)
[»] chr8 (6 HSPs)
chr8 (21-159)||(24423221-24423358)
chr8 (18-123)||(29115557-29115663)
chr8 (59-159)||(9818235-9818334)
chr8 (59-159)||(9881085-9881185)
chr8 (59-166)||(21231906-21232012)
chr8 (53-145)||(42077523-42077614)
[»] scaffold0259 (1 HSPs)
scaffold0259 (53-159)||(2554-2660)
[»] chr4 (3 HSPs)
chr4 (59-167)||(31519155-31519263)
chr4 (69-175)||(3295276-3295382)
chr4 (53-159)||(41943069-41943174)
[»] chr2 (6 HSPs)
chr2 (59-167)||(27977208-27977315)
chr2 (59-167)||(28063736-28063843)
chr2 (70-157)||(22403747-22403834)
chr2 (78-159)||(28497268-28497349)
chr2 (174-243)||(40729646-40729715)
chr2 (78-158)||(16131157-16131237)
[»] scaffold0022 (1 HSPs)
scaffold0022 (59-157)||(2023-2120)
[»] chr1 (4 HSPs)
chr1 (78-159)||(13380297-13380378)
chr1 (53-154)||(31654626-31654726)
chr1 (68-166)||(24304412-24304510)
chr1 (59-137)||(51443583-51443661)
[»] chr5 (2 HSPs)
chr5 (174-243)||(38984787-38984857)
chr5 (83-155)||(18927183-18927255)
[»] scaffold0016 (1 HSPs)
scaffold0016 (53-150)||(107863-107959)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 11650542 - 11650736
Alignment:
Q  18 aaattactaaacaacaattcttatatttattaataacaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11650542 aaattactaaacaacaattcttatatttattaataacaattaatgtcttaactcatcaattgaatcaagaagcatatcaaattcaatatcacaaccaatt 11650641  T
Q  118 attttcttttaaatcatggtcaagactatagcccttaccttatacgctttattccttaatccacaactttagcctcaaactcgcagctaccatac 212  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11650642 attttcttttaaatcatggttaagactatagcccttaccttatatgctttattccttaatccacaactttagcctcaaactcgcagctacgatac 11650736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 52641360 - 52641496
Alignment:
Q  33 aattcttatatttattaataacaatta---atctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaa 129  Q
    ||||||||||||||| ||| | |||||   |||| || ||||||| ||||| |||||||||||||||||||||  |||| || | || ||||||  ||||    
T  52641360 aattcttatatttatcaatcataattataaatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcataatctatcattttcaattaa 52641459  T
Q  130 atcatggtcaagactatagcccttaccttatacgctt 166  Q
    ||||||||||| |||| ||||||||||||||| ||||    
T  52641460 atcatggtcaaaactagagcccttaccttataagctt 52641496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 15990236 - 15990327
Alignment:
Q  68 actcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctta 159  Q
    ||||||| ||| |||||||||||||||||||||||   ||| || | || ||||||  |||||||||||||||||||| |||||||||||||    
T  15990236 actcatccattaaatcaagaagcatatcaaattcaacgtcataatctatcattttcagttaaatcatggtcaagactagagcccttacctta 15990327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 40888766 - 40888847
Alignment:
Q  78 tgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctta 159  Q
    ||||||||||||||||| |||||||   ||| || | || ||||||  ||||||||||| ||||||||  ||||||||||||    
T  40888766 tgaatcaagaagcatattaaattcaacgtcataatctatcattttcaattaaatcatggccaagactagggcccttacctta 40888847  T

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Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 46002764 - 46002887
Alignment:
Q  22 tactaaacaacaattcttatatttattaataacaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattt 121  Q
    |||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  46002764 tactaaccaacaattcttatatttattaataacaattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatcacaacctattattt 46002863  T
Q  122 tcttttaaatcatggtcaagacta 145  Q
    || ||||||||||| |||||||||    
T  46002864 tcatttaaatcatgatcaagacta 46002887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 31211226 - 31211093
Alignment:
Q  21 ttactaaacaacaattcttatatttattaataacaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattatt 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||| ||||||||||||||||||||| | ||||| |||| ||||||    
T  31211226 ttactaaacaacaattcttatatttattaataagaattaatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcataacctattatt 31211127  T
Q  121 ttcttttaaatcatggtcaagactatagccctta 154  Q
    ||| | || |||||| ||||||||| ||||||||    
T  31211126 ttcatctagatcatgatcaagactagagccctta 31211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 46002688 - 46002764
Alignment:
Q  18 aaattactaaacaacaattcttatatttattaataacaattaatctcttaactcatcaattgaatcaagaagcatat 94  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  46002688 aaattactaaccaacaattcttatatttattaataacaattaatcttttcactcatcaatagaatcaagaagcatat 46002764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 29587663 - 29587564
Alignment:
Q  68 actcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttaccttatacgcttt 167  Q
    ||||||| ||| |||||||||||||||||||||||  |||| || | || |||||| || |||||||||||||||||| ||||||||||||| |||||||    
T  29587663 actcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcattcaaatcatggtcaagactagagcccttaccttagacgcttt 29587564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 11036743 - 11036811
Alignment:
Q  174 taatccacaactttagcctcaaactcgcagctaccatacaaacacgatttctccggctctgagcattat 242  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||    
T  11036743 taatccacaactctagcctcaaactcgcagctacgatacagacacaatttctcccgctctgagcattat 11036811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 9745212 - 9745123
Alignment:
Q  68 actcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||||| |||||||||||||||||||||||||||  |||| || | || |||||| |||||| |||||||||||||| ||||||||||||    
T  9745212 actcatccattgaatcaagaagcatatcaaattcaacatcataatctatcattttcctttaaa-catggtcaagactagagcccttacctt 9745123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 13167971 - 13167881
Alignment:
Q  69 ctcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctta 159  Q
    |||||| ||| |||||||||||||||||||||||  |||| || | || ||||||  |||||||||||||||||||| |||||||||||||    
T  13167971 ctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcacttaaatcatggtcaagactagagcccttacctta 13167881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 10530198 - 10530297
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||  |||| || | || |||||| |||||| |||||||||||||| ||||||||||||    
T  10530198 aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttacctt 10530296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 8311808 - 8311731
Alignment:
Q  79 gaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacc 156  Q
    |||||||||||||| |||||||||  |||| || | |||||||||  |||||||||||||||||||| ||| ||||||    
T  8311808 gaatcaagaagcatgtcaaattcaacatcataatctattattttcagttaaatcatggtcaagactagagcacttacc 8311731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 176
Target Start/End: Complemental strand, 48576342 - 48576313
Alignment:
Q  147 agcccttaccttatacgctttattccttaa 176  Q
    ||||||||||||||||||||||||||||||    
T  48576342 agcccttaccttatacgctttattccttaa 48576313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 24423358 - 24423221
Alignment:
Q  21 ttactaaacaacaattcttatatttattaataacaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattatt 120  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||||| ||||||||||  ||||||| ||||| || | || |||    
T  24423358 ttactaaacaacaattattatatttattaataaccattaatctcttcactcatccaatgaat-aagaagcatacaaaattcaatatcataaactatcatt 24423260  T
Q  121 ttcttttaaatcatggtcaagactatagcccttacctta 159  Q
    |||  ||||||||||||||||||||  | ||||||||||    
T  24423259 ttcagttaaatcatggtcaagactagggtccttacctta 24423221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 29115557 - 29115663
Alignment:
Q  18 aaattactaaacaacaattcttatatttattaataacaattaatctc-ttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaat 116  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| || || ||||||| || |||||| ||||||||||||||||| ||||| |||| |     
T  29115557 aaattactaaacaacaattgttatatttattaataataattaatatctttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctac 29115656  T
Q  117 tattttc 123  Q
    |||||||    
T  29115657 tattttc 29115663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 9818235 - 9818334
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||  |||| || | || |||||| |||||| |||||||||||||| ||||||||||||    
T  9818235 aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttacctt 9818333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 9881185 - 9881085
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||| || ||||||| |||||||| | |||||||||||||| |  |||| || | ||||||||| || ||| |||| ||||||||||||||||||||||    
T  9881185 aatcttttcactcatccattgaatcgataagcatatcaaatttaagatcataatctattattttcattcaaaacatgatcaagactatagcccttacctt 9881086  T
Q  159 a 159  Q
    |    
T  9881085 a 9881085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 21231906 - 21232012
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||  |||| || | || |||||| |||||| || ||||||||||| |||| |||||||    
T  21231906 aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-cacggtcaagactagagccattacctt 21232004  T
Q  159 atacgctt 166  Q
    | ||||||    
T  21232005 agacgctt 21232012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 42077523 - 42077614
Alignment:
Q  53 acaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagacta 145  Q
    ||||| ||||| || ||||||| ||| ||||||||||| |||||||||||  |||| || | || ||| || |||||| ||||||||||||||    
T  42077523 acaataaatcttttcactcatccattaaatcaagaagcgtatcaaattcaacatcataatctatcattctcatttaaa-catggtcaagacta 42077614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 2554 - 2660
Alignment:
Q  53 acaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagccct 152  Q
    ||||| ||||| || ||||||| ||| ||||||||||||| |||||||||  |||| |||| || ||||||  ||||||||||||||| |||| ||||||    
T  2554 acaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagccct 2653  T
Q  153 tacctta 159  Q
    |||||||    
T  2654 tacctta 2660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 31519155 - 31519263
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||| || ||||||| ||||| |||||||||||||||||||||   ||| |||| || ||||||  |||||||||||||||||||| |||| |||||||    
T  31519155 aatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcataacctatcattttcaattaaatcatggtcaagactagagcctttacctt 31519254  T
Q  159 atacgcttt 167  Q
      |||||||    
T  31519255 ggacgcttt 31519263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 3295382 - 3295276
Alignment:
Q  69 ctcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttaccttatacgcttta 168  Q
    |||||| ||| |||||||||||||||||||||||  |||| || | || | ||||  |||||||||||||||||||| ||| ||||||||| ||| | ||    
T  3295382 ctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcagtttcacttaaatcatggtcaagactagagctcttaccttagacgttgta 3295283  T
Q  169 ttcctta 175  Q
    |||||||    
T  3295282 ttcctta 3295276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 41943069 - 41943174
Alignment:
Q  53 acaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagccct 152  Q
    ||||| ||||| || ||||||| ||| |||||||||||||||||||||||  | || || | || |||||| |||||| |||||||||||||| |||| |    
T  41943069 acaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacaacataatctatcattttcatttaaa-catggtcaagactagagcctt 41943167  T
Q  153 tacctta 159  Q
    | |||||    
T  41943168 tgcctta 41943174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 27977208 - 27977315
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||  |||| || | || |||||| |||||| |||||| ||||||| ||||||||||||    
T  27977208 aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggttaagactagagcccttacctt 27977306  T
Q  159 atacgcttt 167  Q
    | |||||||    
T  27977307 agacgcttt 27977315  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 28063736 - 28063843
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||  |||| || | || |||||| |||||| |||||| ||||||| ||||||||||||    
T  28063736 aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggttaagactagagcccttacctt 28063834  T
Q  159 atacgcttt 167  Q
    | |||||||    
T  28063835 agacgcttt 28063843  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 22403834 - 22403747
Alignment:
Q  70 tcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacct 157  Q
    ||||| || ||||||||||||||||||||||||  |||| || | |||||||||  |||||||||||| ||||||| |||||||||||    
T  22403834 tcatccatcgaatcaagaagcatatcaaattcaacatcataatctattattttcagttaaatcatggtaaagactagagcccttacct 22403747  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 28497268 - 28497349
Alignment:
Q  78 tgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctta 159  Q
    ||||||||||||||| || ||||||  |||| |||| || ||||||  |||||||||||||||||||| |||||||||||||    
T  28497268 tgaatcaagaagcatgtcgaattcaacatcataacctatcattttcaattaaatcatggtcaagactagagcccttacctta 28497349  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 40729646 - 40729715
Alignment:
Q  174 taatccacaactttagcctcaaactcgcagctaccatacaaacacgatttctccggctctgagcattatt 243  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||| |  ||||||||||||    
T  40729646 taatccacaactttagcctcaaactcgcagttacgatacagacacgatctctcccgtactgagcattatt 40729715  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 16131157 - 16131237
Alignment:
Q  78 tgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctt 158  Q
    ||||||||||||||| || ||||||| |||| |||| || ||||||  ||||| |||||||||||||| ||||||||||||    
T  16131157 tgaatcaagaagcatgtcgaattcagcatcataacctatcattttcaattaaaccatggtcaagactagagcccttacctt 16131237  T

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Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 2120 - 2023
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacct 157  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||  |||| || | ||| ||||| ||||||| ||||||||||||| |||||||||||    
T  2120 aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctattgttttcatttaaat-atggtcaagactagagcccttacct 2023  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 13380297 - 13380378
Alignment:
Q  78 tgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttacctta 159  Q
    |||||||||||| ||||||||||||   ||| |||| || ||||||  |||||||||||||||||||| | |||||||||||    
T  13380297 tgaatcaagaagtatatcaaattcaacgtcataacctatcattttcacttaaatcatggtcaagactagaacccttacctta 13380378  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 31654626 - 31654726
Alignment:
Q  53 acaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagccct 152  Q
    ||||| ||||| || ||||||| ||| |||||||||||||||||||| ||  |||| || | || |||||| |||||| |||||||||||||| ||||||    
T  31654626 acaataaatcttttcactcatccattaaatcaagaagcatatcaaatccaacatcataatctatcattttcatttaaa-catggtcaagactagagccct 31654724  T
Q  153 ta 154  Q
    ||    
T  31654725 ta 31654726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 24304412 - 24304510
Alignment:
Q  68 actcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttaccttatacgctt 166  Q
    ||||||| || |||||| |||||||||||||| || ||||| |||| ||||||||| | |||||| |||| ||||| | |||| |||| ||||| ||||    
T  24304412 actcatcgatagaatcatgaagcatatcaaatccaatatcataacctattattttcatctaaatcgtggttaagacaaaagcctttacattataagctt 24304510  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 51443583 - 51443661
Alignment:
Q  59 aatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggt 137  Q
    ||||| || ||||||| ||| |||||||||||||||||||||||  |||| || | || |||||| || ||||||||||    
T  51443583 aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcattcaaatcatggt 51443661  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 38984787 - 38984857
Alignment:
Q  174 taatccacaactttagcctc-aaactcgcagctaccatacaaacacgatttctccggctctgagcattatt 243  Q
    |||||||||||| ||||| | ||||| |||||||| ||||  ||||||||||||| |||||||||||||||    
T  38984787 taatccacaactctagcccccaaacttgcagctacgatacccacacgatttctcccgctctgagcattatt 38984857  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 18927183 - 18927255
Alignment:
Q  83 caagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcccttac 155  Q
    ||||||||||||||||||||   ||| |||| ||||||||| | ||||| ||||||||||| | |||||||||    
T  18927183 caagaagcatatcaaattcaacttcataacctattattttcatctaaataatggtcaagacaagagcccttac 18927255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 107959 - 107863
Alignment:
Q  53 acaattaatctcttaactcatcaattgaatcaagaagcatatcaaattcagtatcacaaccaattattttcttttaaatcatggtcaagactatagcc 150  Q
    ||||| ||||| || ||||||| ||| ||||||| |||||||||||||||  |||| || | || |||||| |||||| |||||||||||||| ||||    
T  107959 acaataaatcttttcactcatccattaaatcaaggagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcc 107863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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