View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_50 (Length: 242)
Name: NF10265_low_50
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10244175 - 10243951
Alignment:
| Q |
1 |
tatatatactgtgtccaattaagtcaaccaacacaaattaaaaagtgctaaatcacaacattcttattcataacttggagtacaaatgcaccattttctt |
100 |
Q |
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| T |
10244175 |
tatatatactatgtccaatttagtcaaccaacacaaattaaaaagtgctaaatcacaacgttcttattcataacttggagtacaaatgcaccattttctt |
10244076 |
T |
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| Q |
101 |
tcacattcttatcttggtaataggatttgtaaacaaaagactaaaatgaagattccaagaatatataatccttgctttggaaactttat-tatctcttat |
199 |
Q |
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| T |
10244075 |
tcacattcttatcttggtaataggatttgtaaacaaaagactaaaatgaagattccaagaatatataatccttgctttggaaacattatatatctcttat |
10243976 |
T |
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| Q |
200 |
ttaacttatttacttaaaaacatcc |
224 |
Q |
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||||||||||||||||||| ||||| |
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| T |
10243975 |
ttaacttatttacttaaaagcatcc |
10243951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 10218136 - 10217936
Alignment:
| Q |
5 |
tatactgtgtccaattaagtcaaccaacacaaattaaaaagtgctaaatcacaacattcttattcataacttggagtacaaat-gcaccattttctttca |
103 |
Q |
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|||||| |||| |||| ||||||| |||||||| ||| |||| |||||||| ||| ||||||||||||| ||| ||||||||| |||||||||||||||| |
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| T |
10218136 |
tatactctgtcaaatttagtcaacaaacacaaaataagaagtactaaatcataacgttcttattcataatttgaagtacaaatggcaccattttctttca |
10218037 |
T |
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| Q |
104 |
cattcttatcttggtaataggatttgtaaacaaaagactaaaatgaaga-ttccaagaatatataatccttgctttggaaactttat-tatctcttattt |
201 |
Q |
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|| |||| |||||| ||||| ||||||||||| |||| | || |||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||| |
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| T |
10218036 |
cactcttgtcttggcaatagcatttgtaaacataagattgaattgaagatttccaagaatatatgatccttgctttggaaagtttatatatctcttattt |
10217937 |
T |
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| Q |
202 |
a |
202 |
Q |
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| |
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| T |
10217936 |
a |
10217936 |
T |
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