View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_51 (Length: 240)
Name: NF10265_low_51
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_51 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 11747432 - 11747654
Alignment:
| Q |
18 |
agaaaagctgttttcaaactcatacatgatggaactgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcact |
117 |
Q |
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| T |
11747432 |
agaaaagctgttttcaaactcatacatgatggaactgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcact |
11747531 |
T |
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| Q |
118 |
tggcaggatttttagggccttcctctgaccttgatcgtagatctggtcctgctatgcagatgcaaagagagattatgtggttcaaggtgattcatatttt |
217 |
Q |
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| T |
11747532 |
tggcaggatttttagggccttcctctgaccttgatcgtagatctggtcctgctatgcagatgcaaagagagattatgtggttcaaggtgattcatatttt |
11747631 |
T |
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| Q |
218 |
ctcaccatatatagtttcatgat |
240 |
Q |
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| T |
11747632 |
ctcaccatatatagtttcatgat |
11747654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 11883738 - 11883547
Alignment:
| Q |
18 |
agaaaagctgttttcaaactcatacatgatggaactgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcact |
117 |
Q |
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| T |
11883738 |
agaaaagccgttttcgaactcatacatgattcaactgtaaatggacggaaggagatagttaaatgccgcgtagatgcatttggcaattccatgttgcact |
11883639 |
T |
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| Q |
118 |
tggcaggatttttagggccttcctctgaccttgatcgtagatctggtcctgctatgcagatgcaaagagagattatgtggttcaaggtgatt |
209 |
Q |
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| T |
11883638 |
tggcaggatatttagggccttcctctgatcttgatcgtagatccggtcctgctatgcagatgcaaagagaaattctatggttcaaggtgatt |
11883547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 11791809 - 11791638
Alignment:
| Q |
34 |
aactcatacatgatggaactgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagg |
133 |
Q |
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| T |
11791809 |
aactcatacatgatgcaagtgtaaatggacgaaaggaaattgttagatgtcgtgtagatgaatttgataatacccttttgcatctggctggaaatttagg |
11791710 |
T |
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| Q |
134 |
gccttcctctgaccttgatcgtagatctggtcctgctatgcagatgcaaagagagattatgtggttcaaggt |
205 |
Q |
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| T |
11791709 |
gccctcctttgatcttcaccgtagatctggtcctgctctccaaatgcaaagagagattttatggtttaaggt |
11791638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 11836057 - 11835900
Alignment:
| Q |
34 |
aactcatacatgatggaactgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagg |
133 |
Q |
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| T |
11836057 |
aactcatacatgatgcaagtgtaaatggacgaaaggaaattgttagatgtcgtgtagatgcatttgataataccctcttacatcttgctggaaatttagg |
11835958 |
T |
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| Q |
134 |
gccttcctctgaccttgatcgtagatctggtcctgctatgcagatgcaaagagagatt |
191 |
Q |
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| T |
11835957 |
gccctcctttgatcttcaccgtagatctggtcctgctctccaaatgcaaagagagatt |
11835900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 12009527 - 12009392
Alignment:
| Q |
52 |
ctgtaaatggacggaaggagatagttaaatgtcgtgtagacgcttttggcaataccatgttgcacttggcaggatttttagggccttcctctgaccttga |
151 |
Q |
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| T |
12009527 |
ctgtcaatggacgaaaggagatacttagacatcgtatagactcatttggcaataacttgttgcacctggcagcacatttaggtccttcatctgatcgtca |
12009428 |
T |
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| Q |
152 |
tcgtagatctggtcctgctatgcagatgcaaagaga |
187 |
Q |
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| T |
12009427 |
tagcagatccggtgctgctctgcaaatgcaaagaga |
12009392 |
T |
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