View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_56 (Length: 231)
Name: NF10265_low_56
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 23623469 - 23623271
Alignment:
| Q |
15 |
caaaggaccatatcgcttctgcttcactaacaagtcaccttatcgtgaaaaaatcgactttgatgttcattctaaccatttttcaacctttgaacaacat |
114 |
Q |
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| T |
23623469 |
caaaggaccatatcgcttctgcttcactaacaagtcaccttatcgtgaaaaaatcgactttgatgttcattctaaccatttttcaacctttgaacaacat |
23623370 |
T |
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| Q |
115 |
gcacaagatggtgagtcatgtttgaactgattaatttcttacacttcagtttatgcttgtccattttataactgttaagccttctcgaatggtgagtgt |
213 |
Q |
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| T |
23623369 |
gcacaagatggtgagtcatgtttgaactgaataatttcttacacttcagtttatgcttgtccattttatgactgttaagccttctggaatggtgagtgt |
23623271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 23618492 - 23618401
Alignment:
| Q |
64 |
aaaatcgactttgatgttcattctaaccatttttcaacctttgaacaacatgcacaagatggtgagtcatgtttgaactgattaatttctta |
155 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23618492 |
aaaattgactttgatgttcattctaaccatttttcaacctttgatcaacatgcacaagatgatgagtcatgtttgaactgattaatttctta |
23618401 |
T |
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