View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10265_low_7 (Length: 488)
Name: NF10265_low_7
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10265_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Original strand, 1032731 - 1033195
Alignment:
| Q |
11 |
caaaggtggtcttcttatagctgaagctaccggtgtatccgacacagctcaagggtatccagacacgccgggtatatggactaaagagcaagttgaggca |
110 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||| || |||||||||||||||||||| || ||||| |
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| T |
1032731 |
caaaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggtatccagacacaccaggtatatggactaaagagcatgtcgaggcg |
1032830 |
T |
|
| Q |
111 |
tggaaacccattgtagatggtgttcatgccaaaggtgctacattcttctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttatttc |
210 |
Q |
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|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
1032831 |
tggaaacctattgtggatgctgttcatgccaaaggtgctacattcttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttatttc |
1032930 |
T |
|
| Q |
211 |
ctcatataa-tttgaagattattttagatcgatgttgtttgttattgttggatttagattgtgtgtcagcgtgcatgcagtcaaccacatcaagatcggc |
309 |
Q |
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|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1032931 |
ctcatataaatttgaagattattttagttcgatgttgtttgttattgttggatttagattgtgtgtcagcgtgcatgcagtcaaccacatcaagatcggc |
1033030 |
T |
|
| Q |
310 |
tgtctagatttcaatgaaaattttgacttttttaaatctaaattagtgagcttgaaatccagactgtccaatattgatcggacgtgtctgaataaatgca |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1033031 |
tgtctagatttcaatgaaaattttgacttttttaaatctaaattagtgagcttgaaatccggactgtccaatattgatcggacgtgtctgaataaatgca |
1033130 |
T |
|
| Q |
410 |
gtcacaactccttgattatacacaacccaaatctgnnnnnnnnctcttttagtattactactatt |
474 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1033131 |
gtcacaactccttgattatacacaacccaaatctgttttttttttcttttagtattactactatt |
1033195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 1052054 - 1052249
Alignment:
| Q |
11 |
caaaggtggtcttcttatagctgaagctaccggtgtatccgacacagctcaagggtatccagacacgccgggtatatggactaaagagcaagttgaggca |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||| || |||||||||||||||||||| || ||||| |
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|
| T |
1052054 |
caaaggtggtcttctcatagctgaagctaccggtgtctctgacactgctcaagggtatccagacacaccaggtatatggactaaagagcatgtcgaggcg |
1052153 |
T |
|
| Q |
111 |
tggaaacccattgtagatggtgttcatgccaaaggtgctacattcttctgtcagatttggcatgtcggaagagtttctaattcaggtatgtattta |
206 |
Q |
| |
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|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
1052154 |
tggaaacctattgtggatgctgttcatgccaaaggtgctacattcttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta |
1052249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 1064905 - 1065088
Alignment:
| Q |
18 |
ggtcttcttatagctgaagctaccggtgtatccgacacagctcaagggtatccagacacgccgggtatatggactaaagagcaagttgaggcatggaaac |
117 |
Q |
| |
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|||||||| ||| | |||||||||||||| || ||||| ||||||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||||| |
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| T |
1064905 |
ggtcttctcataaccgaagctaccggtgtctctgacaccgctcaagggtatccagatacgccaggtatttggactaaagagcatgtcgaggcatggaaac |
1065004 |
T |
|
| Q |
118 |
ccattgtagatggtgttcatgccaaaggtgctacattcttctgtcagatttggcatgtcggaagagtttctaattcaggtatgt |
201 |
Q |
| |
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||||||| |||| ||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
1065005 |
ccattgtggatgctgttcatgctaaaggtgctaccatcttttgtcagatttggcatgttggaagagtttctgattcaggtatgt |
1065088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 1057869 - 1058060
Alignment:
| Q |
18 |
ggtcttcttatagctgaagctaccggtgtatccgacacagctcaagggtatccagacacgccgggtatatggactaaagagcaagttgaggcatggaaac |
117 |
Q |
| |
|
|||||||| ||| | |||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||||| |
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|
| T |
1057869 |
ggtcttctcataaccgaagctaccggtatatctgacaccgctcaagggtatccagacacgccaggtatttggactaaagagcacgtcgaggcgtggaaac |
1057968 |
T |
|
| Q |
118 |
ccattgtagatggtgttcatgccaaaggtgctacattcttctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttatttc |
210 |
Q |
| |
|
| ||||| |||| ||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||| || | ||||||| |||||||| |
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|
| T |
1057969 |
ctattgtggatgctgtccatgccaaaggtgctaccttcttctgtcagatttggcacgttggaagagtttctgatactggtatgt-tttatttc |
1058060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 1043140 - 1043327
Alignment:
| Q |
12 |
aaaggtggtcttcttatagctgaagctaccggtgtatccgacacagctcaagggtatccagacacgccgggtatatggactaaagagcaagttgaggcat |
111 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||| || ||||| |||||||| |||||| ||||||| || |||||||||||||||||||||||||| | |
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|
| T |
1043140 |
aaaggtggtattctcatagctgaagctactggtgtttcagacactgctcaaggctatccaaacacgccaggaatatggactaaagagcaagttgaggcgt |
1043239 |
T |
|
| Q |
112 |
ggaaacccattgtagatggtgttcatgccaaaggtgctacattcttctgtcagatttggcatgtcggaagagtttctaattcaggtat |
199 |
Q |
| |
|
||||||| || ||||||| ||||||| |||||| | || ||| |||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
1043240 |
ggaaacctatcgtagatgcggttcatgacaaaggcggtatatttttctgtcagatttggcatgttggaagagtttcaaattcaggtat |
1043327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 1070203 - 1070392
Alignment:
| Q |
12 |
aaaggtggtcttcttatagctgaagctaccggtgtatccgacacagctcaagggtatccagacacgccgggtatatggactaaagagcaagttgaggcat |
111 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| || || || |||||||| |||||| ||||||| ||||||||||||||||||||||| || |||| |
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|
| T |
1070203 |
aaaggtggtcttctcatagccgaagctaccggtgtctctgataccgctcaaggctatccaaacacgcctggtatatggactaaagagcaagtcgatgcat |
1070302 |
T |
|
| Q |
112 |
ggaaacccattgtagatggtgttcatgccaaaggtgctacattcttctgtcagatttggcatgtcggaagagtttctaattcaggtatgt |
201 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||| | | ||| |||||||| ||||||||||| |||||||||||| || | ||||||| |
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|
| T |
1070303 |
ggaaacccattgtggatgctgttcatgacaaaggcggtgtatttttctgtcaaatttggcatgttggaagagtttctgatactggtatgt |
1070392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 1049234 - 1049439
Alignment:
| Q |
12 |
aaaggtggtcttcttatagctgaagctaccggtgtatccgacacagctcaagggtatccagacacgccgggtatatggactaaagagcaagttgaggcat |
111 |
Q |
| |
|
||||| || ||||| |||||||||||||| ||||| || ||||| |||||||| |||||| ||||||| |||||||||||||||||||| |||||||| | |
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|
| T |
1049234 |
aaaggaggccttctcatagctgaagctactggtgtctcagacactgctcaaggctatccaaacacgccaggtatatggactaaagagcatgttgaggcgt |
1049333 |
T |
|
| Q |
112 |
ggaaacccattgtagatggtgttcatgccaaaggtgctacattcttctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttatttcc |
211 |
Q |
| |
|
||||||| |||||| ||| ||||||| ||||| | || ||| |||||||| |||||||||| ||||| ||||| ||||||||||||||| |||||| |
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|
| T |
1049334 |
ggaaacctattgtaaatgcggttcatgataaaggcggtatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgtatctatttcg |
1049433 |
T |
|
| Q |
212 |
tcatat |
217 |
Q |
| |
|
|||||| |
|
|
| T |
1049434 |
tcatat |
1049439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 1045894 - 1046016
Alignment:
| Q |
84 |
atatggactaaagagcaagttgaggcatggaaacccattgtagatggtgttcatgccaaaggtgctacattcttctgtcagatttggcatgtcggaagag |
183 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||| || || |||| |||||||||||||||||||||||||||| ||| ||||||| ||| || || | |
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|
| T |
1045894 |
atatggacaaaagagcaagtcgaagcgtggaaacctatcgtggatgctgttcatgccaaaggtgctacattcttcgatcaaatttggcttgttggtaggg |
1045993 |
T |
|
| Q |
184 |
tttctaattcaggtatgtattta |
206 |
Q |
| |
|
|||||||||| |||||| ||||| |
|
|
| T |
1045994 |
tttctaattctggtatgcattta |
1046016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 1641866 - 1641724
Alignment:
| Q |
64 |
ggtatccagacacgccgggtatatggactaaagagcaagttgaggcatggaaacccattgtagatggtgttcatgccaaaggtgctacattcttctgtca |
163 |
Q |
| |
|
|||||||| |||| || || || |||| ||||| |||||||| | |||||||||||| |||||| |||||||||||||| | || |||||| ||||| |
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| T |
1641866 |
ggtatccaaacacaccaggcatttggagaaaagatcaagttgaaacttggaaacccattatagatgctgttcatgccaaagaaggtatattcttttgtca |
1641767 |
T |
|
| Q |
164 |
gatttggcatgtcggaagagtttctaattcaggtatgtattta |
206 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||| |||||| |
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|
| T |
1641766 |
gatttggcatggtggaagggcttctaattcaggtatttattta |
1641724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 1049588 - 1049641
Alignment:
| Q |
156 |
ttctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttattt |
209 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
1049588 |
ttctgtcaaatttggcatgttggaagagtttcaaattcagctatttatttattt |
1049641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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