View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10265_low_9 (Length: 449)

Name: NF10265_low_9
Description: NF10265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10265_low_9
NF10265_low_9
[»] chr6 (8 HSPs)
chr6 (30-291)||(24960920-24961181)
chr6 (18-291)||(20421565-20421838)
chr6 (30-291)||(20405903-20406158)
chr6 (323-441)||(24960770-24960888)
chr6 (323-441)||(20405753-20405871)
chr6 (323-417)||(20421870-20421964)
chr6 (375-437)||(34120187-34120249)
chr6 (412-441)||(20425229-20425258)
[»] chr2 (2 HSPs)
chr2 (18-291)||(32260274-32260547)
chr2 (323-441)||(32260124-32260242)
[»] scaffold0117 (2 HSPs)
scaffold0117 (18-288)||(24231-24501)
scaffold0117 (323-441)||(24536-24654)
[»] chr4 (2 HSPs)
chr4 (78-291)||(24772185-24772398)
chr4 (323-440)||(24772430-24772547)
[»] chr3 (1 HSPs)
chr3 (18-113)||(23930670-23930765)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 24961181 - 24960920
Alignment:
Q  30 aagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgtaggtaccataaataatt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24961181 aagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgtaggtaccataaataatt 24961082  T
Q  130 tattttgaatatttaaggtaattctagtagctacccaatttaatggatgtatagatccatcagctatttgaatttttaatggtttttctaatttttccca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24961081 tattttgaatatttaaggtaattctagtagctacccaatttaatggatgtatagatccatcagctatttgaatttttaatggtttttctaatttttccca 24960982  T
Q  230 tttacaaaataatgcttttgttgctatacaaatacttgcacctgtatctatataagcttcag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24960981 tttacaaaataatgcttttgttgctatacaaatacttgcacctgtatctatataagcttcag 24960920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 20421565 - 20421838
Alignment:
Q  18 gaaatatacttgaagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgtaggta 117  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| |     
T  20421565 gaaatatactctaagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccatgttttttgttgatatacggtagatg 20421664  T
Q  118 ccataaataatttattttgaatatttaaggtaattctagtagctacccaatttaatggatgtatagatccatcagctatttgaatttttaatggtttttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20421665 ccataaataatttattttgaatatttaaggtaattctagtagctatccaatttaatggatgtatagatccatcagctatttgaatttttaatggtttttc 20421764  T
Q  218 taatttttcccatttacaaaataatgcttttgttgctatacaaatacttgcacctgtatctatataagcttcag 291  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  20421765 taatttttcccatttactaaataatgcttttgttgctatacaaatatttgcccctgtatctatataagcttcag 20421838  T

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Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 20406158 - 20405903
Alignment:
Q  30 aagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgtaggtaccataaataatt 129  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  20406158 aagtattaggaaaaaggtgcatataatcttagaaaattatttcctactatcatatctaaccctgttttttgttgatataccgtaggtgccataaataatt 20406059  T
Q  130 tattttgaatatttaaggtaattctagtagctacccaatttaatggatgtatagatccatcagctatttgaatttttaatggtttttctaatttttccca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20406058 tattttgaatatttaaggtaattctagtagctacccaatttaatggatgtatagatccatcagctatctgaatttttaatggtttttctaatttttccca 20405959  T
Q  230 tttacaaaataatgcttttgttgctatacaaatacttgcacctgtatctatataagcttcag 291  Q
    ||||| ||||||      ||||||||||||||||||||| ||||||||||||||| ||||||    
T  20405958 tttactaaataa------tgttgctatacaaatacttgcccctgtatctatataaacttcag 20405903  T

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Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 323 - 441
Target Start/End: Complemental strand, 24960888 - 24960770
Alignment:
Q  323 aatataagtactattcaaattctgtttcctctgaagataattcatattctatttcctctgaagataggttatcttctaaatattcatatacactacaatc 422  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24960888 aatataagtactatttaaattctgtttcctctgaagataattcatattctatttcctctgaagataggttatcttctaaatattcatatacactacaatc 24960789  T
Q  423 actatcacttagttcatct 441  Q
    |||||||||||||||||||    
T  24960788 actatcacttagttcatct 24960770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 323 - 441
Target Start/End: Complemental strand, 20405871 - 20405753
Alignment:
Q  323 aatataagtactattcaaattctgtttcctctgaagataattcatattctatttcctctgaagataggttatcttctaaatattcatatacactacaatc 422  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20405871 aatataagtactattcaaattctgtttcttctgaagataattcatactctatttcctttgaagataggttatcttctaaatattcatatacactacaatc 20405772  T
Q  423 actatcacttagttcatct 441  Q
    |||||||||||||||||||    
T  20405771 actatcacttagttcatct 20405753  T

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Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 323 - 417
Target Start/End: Original strand, 20421870 - 20421964
Alignment:
Q  323 aatataagtactattcaaattctgtttcctctgaagataattcatattctatttcctctgaagataggttatcttctaaatattcatatacacta 417  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20421870 aatataagtactattcaaattctgtttcttctgaagataattcatattctatttcctttgaagataggttatcttctaaatattcatatacacta 20421964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 34120187 - 34120249
Alignment:
Q  375 ttcctctgaagataggttatcttctaaatattcatatacactacaatcactatcacttagttc 437  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34120187 ttcctctgaagataggttatctcctaaatattcatatacactacaatcactatcacttagttc 34120249  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 20425229 - 20425258
Alignment:
Q  412 acactacaatcactatcacttagttcatct 441  Q
    ||||||||||||||||||||||||||||||    
T  20425229 acactacaatcactatcacttagttcatct 20425258  T

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Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 32260547 - 32260274
Alignment:
Q  18 gaaatatacttgaagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgtaggta 117  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32260547 gaaatatactctaagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgtaggta 32260448  T
Q  118 ccataaataatttattttgaatatttaaggtaattctagtagctacccaatttaatggatgtatagatccatcagctatttgaatttttaatggtttttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32260447 ccataaataatttattttgaatatttaaggtaattctagtagctacccaatttaatggatgtatagatccatcagctatttgaatctttaatggtttttc 32260348  T
Q  218 taatttttcccatttacaaaataatgcttttgttgctatacaaatacttgcacctgtatctatataagcttcag 291  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32260347 taatttttcccatttactaaataatgcttttgttgctatacaaatacttgcccctgtatctatataagcttcag 32260274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 323 - 441
Target Start/End: Complemental strand, 32260242 - 32260124
Alignment:
Q  323 aatataagtactattcaaattctgtttcctctgaagataattcatattctatttcctctgaagataggttatcttctaaatattcatatacactacaatc 422  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32260242 aatataagtactattcaaattttgtttcttctgaagataattcatattcaatttcctctgaagataggttatctcctaaatattcatatacactacaatc 32260143  T
Q  423 actatcacttagttcatct 441  Q
    |||||||||||||||||||    
T  32260142 actatcacttagttcatct 32260124  T

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Target: scaffold0117 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 24231 - 24501
Alignment:
Q  18 gaaatatacttgaagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgtaggta 117  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24231 gaaatatactctaagtattggaaaaaaggtgcatataatcttaaaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgtaggta 24330  T
Q  118 ccataaataatttattttgaatatttaaggtaattctagtagctacccaatttaatggatgtatagatccatcagctatttgaatttttaatggtttttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  24331 ccataaataatttattttgaatatttaaggtaattctagtagctacccaatttaatggatgtataaatccatcagctatttgaatctttaatggtttttc 24430  T
Q  218 taatttttcccatttacaaaataatgcttttgttgctatacaaatacttgcacctgtatctatataagctt 288  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24431 taatttttccaatttactaaataatgcttttgttgctatacaaatacttgcccctgtatctatataagctt 24501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 323 - 441
Target Start/End: Original strand, 24536 - 24654
Alignment:
Q  323 aatataagtactattcaaattctgtttcctctgaagataattcatattctatttcctctgaagataggttatcttctaaatattcatatacactacaatc 422  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24536 aatataagtactattcaaattctgtttcttctgaagataattcatattctatttcctctgaagataggttatctcctaaatattcatatacactacaatc 24635  T
Q  423 actatcacttagttcatct 441  Q
    |||||||||||||||||||    
T  24636 actatcacttagttcatct 24654  T

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Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 78 - 291
Target Start/End: Original strand, 24772185 - 24772398
Alignment:
Q  78 atcatatctaaccctgtttcttgttgatataccgtaggtaccataaataatttattttgaatatttaaggtaattctagtagctacccaatttaatggat 177  Q
    ||||| ||||| | |||||||||||||||||  |||||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||    
T  24772185 atcatgtctaatcatgtttcttgttgatatattgtaggtactatacataatttcttttgaatatttaaggtgattctagtggctacccaatttaatggat 24772284  T
Q  178 gtatagatccatcagctatttgaatttttaatggtttttctaatttttcccatttacaaaataatgcttttgttgctatacaaatacttgcacctgtatc 277  Q
    ||||||||||||||||||||||||||||||||||||| || | ||||||| |||||| ||||||| |||||||||||||||||||||| || | ||||||    
T  24772285 gtatagatccatcagctatttgaatttttaatggtttatcaattttttccaatttactaaataatacttttgttgctatacaaatactcgctcatgtatc 24772384  T
Q  278 tatataagcttcag 291  Q
    ||||||||||||||    
T  24772385 tatataagcttcag 24772398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 440
Target Start/End: Original strand, 24772430 - 24772547
Alignment:
Q  323 aatataagtactattcaaattctgtttcctctgaagataattcatattctatttcctctgaagataggttatcttctaaatattcatatacactacaatc 422  Q
    ||||||||||||||||| ||| |||||| ||| || ||| |||||  |||||||| ||| ||| ||    |||||||| |||||||||||| ||||||||    
T  24772430 aatataagtactattcagattttgtttcatcttaatatagttcatcatctatttcttctaaaggtataacatcttctatatattcatatacgctacaatc 24772529  T
Q  423 actatcacttagttcatc 440  Q
    ||||||||||||||||||    
T  24772530 actatcacttagttcatc 24772547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 23930670 - 23930765
Alignment:
Q  18 gaaatatacttgaagtattggcaaaaaggtgcatataatcttagaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgta 113  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23930670 gaaatatactctaagtattggcaaaaaggtgcatataatcttaaaaaattatttcctattatcatatctaaccctgtttcttgttgatataccgta 23930765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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