View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10266_high_3 (Length: 283)
Name: NF10266_high_3
Description: NF10266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10266_high_3 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 45746877 - 45746638
Alignment:
| Q |
25 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
124 |
Q |
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| T |
45746877 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
45746778 |
T |
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| Q |
125 |
atcgtcgaacccaaatgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcactcgcgatctgagttgtggcattaaggtttttaatg |
224 |
Q |
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| T |
45746777 |
atcgtcgaacccaaatgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcagtcgcgatctgagttgcggcattaaggtttttaatg |
45746678 |
T |
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| Q |
225 |
tctccacaacaaggttgcctaagctgcttttgtttgtgat |
264 |
Q |
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| T |
45746677 |
tctccacaacaaggttgcctaagccgcttttgtttgtgat |
45746638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 10081 - 9960
Alignment:
| Q |
25 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
124 |
Q |
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|||||||||||||||||||| ||||||||||| || ||||| || |||||||||| |||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
10081 |
agtttcttcaaggagtgtccacatcctgatgagaagcaaagaactgaccttagcaagaagcttggcttggcaaacaaacaagtcaagttctggtttcaga |
9982 |
T |
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| Q |
125 |
atcgtcgaacccaaatgaaggt |
146 |
Q |
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| T |
9981 |
atcggcgaactcagatgaaggt |
9960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 12327178 - 12327055
Alignment:
| Q |
25 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
124 |
Q |
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||||| || |||||||||||||| || ||||| |||||||| ||||| |||||||| || ||| | ||||||| | |||||| || || ||||| || | |
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| T |
12327178 |
agtttgtttaaggagtgtcctcacccagatgagaaacaaagattggaacttagcaaaaggctttgtttggaaacaagacaagttaagttttggttccaaa |
12327079 |
T |
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| Q |
125 |
atcgtcgaacccaaatgaaggtga |
148 |
Q |
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| T |
12327078 |
atcgaagaacacaaatgaaggtga |
12327055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 28597614 - 28597652
Alignment:
| Q |
31 |
ttcaaggagtgtcctcatcctgatgaaaaacaaaggttg |
69 |
Q |
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| T |
28597614 |
ttcaaggagtgtcctcatcctgatgagaaacaaaggttg |
28597652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 28599429 - 28599320
Alignment:
| Q |
37 |
gagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcagaatcgtcgaaccc |
136 |
Q |
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| T |
28599429 |
gagtgtcctcatcctgatgaaaaacaaagacttgaacttagcaaaaggctttgtttggaaacaagacaagtcaagttttggttccaaaatagaagaacac |
28599330 |
T |
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| Q |
137 |
aaatgaaggt |
146 |
Q |
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| T |
28599329 |
aaatgaaggt |
28599320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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