View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10266_low_1 (Length: 351)
Name: NF10266_low_1
Description: NF10266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10266_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 77 - 345
Target Start/End: Complemental strand, 28273933 - 28273665
Alignment:
| Q |
77 |
cctttgatgggggagggggtttagttaaggtggaaagtttttgatgaatgatttggttaatgacacattcctcttatggatagaaacctttttctatgat |
176 |
Q |
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| T |
28273933 |
cctttgatggtggagggggtttagttaaggtggaaagtttttgatgaatgatttggttaatgacacattcctcttatggatagaaacctttttctatgat |
28273834 |
T |
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| Q |
177 |
ttgttggacacttttgagtaaagaaccaatacaaaacaaaagaagtggaaaggagatgaggggaacaaaaataccagtgttgcacttgtacacataattg |
276 |
Q |
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| T |
28273833 |
ttgttggacacttttgagtaaagaaccaatacaaaacaaaagaagtggaaaggagatgaggggaacaaaaataccagtgttgcacttgtacacataattg |
28273734 |
T |
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| Q |
277 |
gcactataatgactagtgactggccttgtgtgacaacttattttcttggataaactcaaattcttctct |
345 |
Q |
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| T |
28273733 |
gcactataatgactagtgactggccttgtgtgacaacttattttcttggataaactcaaattcttctct |
28273665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28274000 - 28273962
Alignment:
| Q |
1 |
ccatccacaacgattattaattgatcaatacaacctcaa |
39 |
Q |
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| T |
28274000 |
ccatccacaacgattattaattgatcaatacaacctcaa |
28273962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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