View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10266_low_4 (Length: 277)
Name: NF10266_low_4
Description: NF10266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10266_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 4246729 - 4246539
Alignment:
| Q |
21 |
taatagatagatctatacacataccatttaaagaaaaatgagcaaagagagatccccacataccaaatggagacgaggacgagatttatacataacaagt |
120 |
Q |
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| T |
4246729 |
taatagatagatctatacacataccatttaaagaaaaatgagcaaagagagatccccacataccaaatggagacgaggacgagatttatacataacaagt |
4246630 |
T |
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| Q |
121 |
cgagagataaataagacaacaacatgttttacatatactcaatgaaaagagaagagacggctagggtttctctcacagaaatatgatgcag |
211 |
Q |
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| T |
4246629 |
cgagagataaataagacaacaacatgttttacatatactcaatgaaaagagaagagacgactaggatttctctcacagaaatatgatgcag |
4246539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 4246528 - 4246495
Alignment:
| Q |
226 |
accgcttctcaagtttgactaaacaatataaagt |
259 |
Q |
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| T |
4246528 |
accgcttctcaagtttgactgaacaatataaagt |
4246495 |
T |
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