View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10266_low_5 (Length: 239)
Name: NF10266_low_5
Description: NF10266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10266_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 37316775 - 37316925
Alignment:
| Q |
73 |
taaactctagtttagtagtaatacacctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaat |
172 |
Q |
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| T |
37316775 |
taaactctagtttagtagtaatacacctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaat |
37316874 |
T |
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| Q |
173 |
ttagcttgagcatacccacgtacaaaacgaaaagccccagttccaccaaca |
223 |
Q |
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| T |
37316875 |
ttagcttgagcatacccacgtacaaaacgaaaagccccagttccaccaaca |
37316925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37320271 - 37320504
Alignment:
| Q |
1 |
tttgactttcactttaggtgagagtgtctaacaggagcataataacaatttaccgaataacaaatnnnnnnntaaactctagtttagt--ag------ta |
92 |
Q |
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| T |
37320271 |
tttgactttcactttaggcgagagtgtgtaacagaagcataataacaatttactgaataacaaatcaaaatataaactctacttttatgaagcacctata |
37320370 |
T |
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| Q |
93 |
a---tacacctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttagcttgagcataccc |
189 |
Q |
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| T |
37320371 |
aggctagacctaactaataatggaacataaatatgtcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttagcttgagcataacc |
37320470 |
T |
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| Q |
190 |
acgtacaaaacgaaaagccccagttccaccaaca |
223 |
Q |
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| T |
37320471 |
acgtacaaaacgaaaagccccagttccaccaaca |
37320504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 37324360 - 37324484
Alignment:
| Q |
98 |
cctagctaataatggaatacgaatacatcatactccacaatggcatctcctttagtgtaatcaacggaataaaatttagcttgagcatacccacgtacaa |
197 |
Q |
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|||| |||||||||||| || |||| ||||| || |||| |||||||||||| || |||||||| |||||||| ||||| |||||||| |||||||| | |
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| T |
37324360 |
cctaactaataatggaacacaaatatgtcatattctacaacggcatctccttttgtataatcaaccgaataaaacttagcctgagcatatccacgtacga |
37324459 |
T |
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| Q |
198 |
aacgaaaagccccagttccaccaac |
222 |
Q |
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| T |
37324460 |
aacgaaatgccccggttccaccaac |
37324484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 37306524 - 37306580
Alignment:
| Q |
167 |
taaaatttagcttgagcatacccacgtacaaaacgaaaagccccagttccaccaaca |
223 |
Q |
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||||| || ||||||||||| ||||| ||||| | ||||||||||||||||||||| |
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| T |
37306524 |
taaaacttggcttgagcataaccacgaacaaatctgaaagccccagttccaccaaca |
37306580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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