View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10267_high_11 (Length: 260)
Name: NF10267_high_11
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10267_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 49833758 - 49833519
Alignment:
| Q |
1 |
aatcagctacaaaaggtgatattgactttatcacataagaagatatcaaagtccggcaaattgttcaagtactgccttttcagtgcgagttgaataatga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49833758 |
aatcagttacaaaaggtgatattgactttatcacataagaagatatcaaagtccagcgaattgttcaagtactgccttttcagtgcgagttgaataatga |
49833659 |
T |
|
| Q |
101 |
taatctatgaactcctcatacttaaatggacgataatgaagagggtgatctttgtcatccaccaactcagagggcaccttaatgactgcatcttcctttg |
200 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49833658 |
taatctatgaactcctcatacttaaatgggcgataatgaagagggtgatctttgtcatccaccaactcagagggcaccttaatgactgcatcttcctttg |
49833559 |
T |
|
| Q |
201 |
gcactccaaaaagaataaaagcaagtctctctttgtctcc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
49833558 |
gcactccaaaaagaataaaagcaagtctctctttgtctcc |
49833519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 6930040 - 6930179
Alignment:
| Q |
101 |
taatctatgaactcctcatacttaaatggacgataatgaagagggtgatctttgtcatccaccaactcagagggcaccttaatgactgcatcttcctttg |
200 |
Q |
| |
|
|||| |||| |||||||||||||||| || || ||| | |||||||||| || ||||||||||| ||||||||||||| ||| || || |||||||| |
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| T |
6930040 |
taatgtatgtactcctcatacttaaaaggccggtaacggagagggtgattttcatcatccaccaattcagagggcacctcaataaccatattttcctttg |
6930139 |
T |
|
| Q |
201 |
gcactccaaaaagaataaaagcaagtctctctttgtctcc |
240 |
Q |
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| | | | | ||||||||| |||| ||||||||||||||| |
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| T |
6930140 |
gaattgccataagaataaatgcaattctctctttgtctcc |
6930179 |
T |
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