View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10267_high_12 (Length: 251)

Name: NF10267_high_12
Description: NF10267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10267_high_12
NF10267_high_12
[»] chr3 (20 HSPs)
chr3 (12-205)||(49833950-49834144)
chr3 (43-204)||(27716648-27716816)
chr3 (39-132)||(19583572-19583668)
chr3 (206-250)||(1078366-1078410)
chr3 (22-130)||(22449806-22449914)
chr3 (205-250)||(54237244-54237289)
chr3 (206-250)||(42394327-42394371)
chr3 (206-250)||(52629976-52630020)
chr3 (205-251)||(24688309-24688355)
chr3 (205-250)||(40809013-40809058)
chr3 (205-250)||(42100836-42100881)
chr3 (206-250)||(36150278-36150322)
chr3 (206-250)||(46941201-46941245)
chr3 (68-130)||(43901729-43901791)
chr3 (205-250)||(45126835-45126880)
chr3 (205-250)||(53581765-53581810)
chr3 (206-250)||(25413829-25413873)
chr3 (206-250)||(40480897-40480941)
chr3 (206-250)||(47190934-47190978)
chr3 (206-242)||(54246056-54246092)
[»] chr2 (10 HSPs)
chr2 (12-192)||(19124824-19125006)
chr2 (12-185)||(17363886-17364062)
chr2 (12-99)||(45550478-45550565)
chr2 (205-250)||(16096896-16096941)
chr2 (206-250)||(4764634-4764678)
chr2 (206-250)||(19047305-19047349)
chr2 (206-250)||(43490309-43490353)
chr2 (207-250)||(42849768-42849811)
chr2 (206-250)||(30838780-30838824)
chr2 (205-250)||(43335670-43335715)
[»] chr6 (18 HSPs)
chr6 (21-185)||(21671508-21671676)
chr6 (21-185)||(21678924-21679092)
chr6 (43-183)||(26947824-26947967)
chr6 (68-185)||(3356688-3356806)
chr6 (43-132)||(18386251-18386343)
chr6 (43-132)||(31136467-31136559)
chr6 (206-250)||(9698241-9698285)
chr6 (206-250)||(21293585-21293629)
chr6 (204-250)||(30736130-30736176)
chr6 (209-250)||(7367697-7367738)
chr6 (206-250)||(3213548-3213592)
chr6 (206-250)||(21280077-21280121)
chr6 (203-250)||(7292895-7292942)
chr6 (203-250)||(24203892-24203939)
chr6 (207-250)||(30014491-30014534)
chr6 (212-250)||(26669923-26669961)
chr6 (116-162)||(28623957-28624003)
chr6 (206-250)||(26466947-26466991)
[»] chr7 (14 HSPs)
chr7 (43-183)||(12484621-12484765)
chr7 (43-183)||(12506052-12506196)
chr7 (43-179)||(12657240-12657379)
chr7 (203-250)||(42538336-42538383)
chr7 (205-250)||(43343531-43343576)
chr7 (206-250)||(5810832-5810876)
chr7 (206-250)||(24000920-24000964)
chr7 (206-250)||(44416842-44416886)
chr7 (205-250)||(32029724-32029769)
chr7 (206-250)||(16180265-16180309)
chr7 (206-245)||(38160470-38160509)
chr7 (209-250)||(27393171-27393212)
chr7 (206-250)||(41861824-41861868)
chr7 (206-250)||(44326326-44326370)
[»] chr8 (15 HSPs)
chr8 (12-199)||(16208181-16208370)
chr8 (13-106)||(19706597-19706690)
chr8 (108-204)||(19708007-19708103)
chr8 (206-250)||(11582914-11582958)
chr8 (207-250)||(42197344-42197387)
chr8 (204-250)||(2547144-2547190)
chr8 (202-250)||(3743919-3743967)
chr8 (206-250)||(30912470-30912514)
chr8 (206-250)||(36743391-36743435)
chr8 (205-248)||(9241702-9241745)
chr8 (211-250)||(29705510-29705549)
chr8 (212-250)||(29800864-29800902)
chr8 (205-250)||(31384812-31384857)
chr8 (206-250)||(20148908-20148952)
chr8 (206-250)||(45397464-45397507)
[»] scaffold0187 (2 HSPs)
scaffold0187 (202-250)||(14093-14141)
scaffold0187 (202-250)||(24421-24469)
[»] scaffold0157 (1 HSPs)
scaffold0157 (43-205)||(27371-27539)
[»] chr4 (14 HSPs)
chr4 (43-205)||(12492938-12493106)
chr4 (43-182)||(39668106-39668249)
chr4 (206-250)||(1771174-1771218)
chr4 (206-250)||(27550457-27550501)
chr4 (204-250)||(33703289-33703335)
chr4 (205-250)||(43514593-43514638)
chr4 (206-250)||(27864712-27864756)
chr4 (206-250)||(27893750-27893794)
chr4 (206-250)||(28982730-28982774)
chr4 (206-250)||(43735890-43735934)
chr4 (43-132)||(6095549-6095641)
chr4 (205-242)||(35017888-35017925)
chr4 (206-250)||(23036128-23036172)
chr4 (206-250)||(55966254-55966298)
[»] chr1 (9 HSPs)
chr1 (204-250)||(5489924-5489970)
chr1 (205-250)||(48498869-48498914)
chr1 (206-250)||(50448168-50448212)
chr1 (205-250)||(43570993-43571038)
chr1 (206-250)||(750213-750257)
chr1 (206-250)||(4401476-4401520)
chr1 (206-250)||(24769407-24769451)
chr1 (207-250)||(37814926-37814969)
chr1 (206-250)||(7447973-7448017)
[»] chr5 (9 HSPs)
chr5 (57-185)||(19663956-19664088)
chr5 (206-250)||(2614557-2614601)
chr5 (206-250)||(25914904-25914948)
chr5 (198-250)||(41334563-41334615)
chr5 (205-250)||(18034130-18034175)
chr5 (206-250)||(5257143-5257187)
chr5 (37-132)||(24394910-24395007)
chr5 (212-250)||(38470727-38470765)
chr5 (206-250)||(7617281-7617325)
[»] scaffold0038 (1 HSPs)
scaffold0038 (206-250)||(112803-112847)
[»] scaffold0119 (1 HSPs)
scaffold0119 (212-250)||(833-871)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 49834144 - 49833950
Alignment:
Q  12 caaaggaaaagtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattatcaaagcacataat-gg 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  49834144 caaaggaaaagtcttttaaggtttcgtgtctttgttaagccttgtgctttattgtatacctctctggttgctgctattgattatcaaagcacataattgg 49834045  T
Q  111 tttgttttagttgagttgtattggaccaaaaccatcgtttgagaaaagagtcttattaggttttgagtccttgattgtgagcctctctttgtatt 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49834044 tttgttttagttgagttgtattggaccaaaaacatcgtttgagaaaagagtcttattaggttttgagtccttgattgtgagcctctctttgtatt 49833950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 27716816 - 27716648
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaa 139  Q
    ||||||||| ||||||||||||  ||| |||||| |   |||||||||| |||| ||||||||||| |||||||| ||||||||||||||||| || |||    
T  27716816 ttgttaagctttgtgctttattttgtaaacctctctatgtgctgctattcattagcaaagcacatagatggtttgctttagttgagttgtatttgatcaa 27716717  T
Q  140 aaccatcgtttgagaaaagagtcttatta-ggttttgagtcct---tgattgtgagcctctctttgtat 204  Q
    |  | || ||||||||||||||||||||| |||||||| ||||   |  ||||||||||||||||||||    
T  27716716 agacgtcatttgagaaaagagtcttattagggttttgaatcctcgctatttgtgagcctctctttgtat 27716648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 19583572 - 19583668
Alignment:
Q  39 gtctttgttaagccttgtgcttta--ttgtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtatt 132  Q
    ||||||| ||||||||||||||||  || ||||||||| |   ||| || |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  19583572 gtctttgctaagccttgtgctttattttttatacctctctatgtgccgccattgattatcaaagcacatatatggtttgtttgagttgagttgtatt 19583668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 1078410 - 1078366
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  1078410 gagtgatgatacatgtaccacctcatgtggcaatacaccctttac 1078366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 22449806 - 22449914
Alignment:
Q  22 gtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttag 120  Q
    |||||||| || ||| ||||||| |||||| |||||||| ||||||||| | ||||  || ||| |||||||||||||||||| | ||  ||||||||||    
T  22449806 gtcttttagggtttcatgtctttattaagctttgtgctt-attgtatacatgtttgtgtgttgccattgattatcaaagcacaaagataatttgttttag 22449904  T
Q  121 ttgagttgta 130  Q
    ||||||||||    
T  22449905 ttgagttgta 22449914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 54237289 - 54237244
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  54237289 tgagtgatgatacatgtaccaccccatgtggcaatacaccctttac 54237244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 42394327 - 42394371
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  42394327 gagtgatgatacatgtaccaccccatgtggcaatacaccctttac 42394371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 52630020 - 52629976
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  52630020 gagtgatgatacatgtaccaccccatgtggcaatacaccctttac 52629976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 24688309 - 24688355
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttacc 251  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  24688309 tgagtgatgatacatgtaccaccccatgtggcaatacaccatttacc 24688355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 40809058 - 40809013
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||    
T  40809058 tgagtgatgatacatgtaccaccccatgtggcaatacaccttttac 40809013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 42100881 - 42100836
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||    
T  42100881 tgagtgatcatacatgtaccacctcatgtggcaatgcaccctttac 42100836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 36150322 - 36150278
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  36150322 gagtggtgatacatgtaccaccccatgtggcaatacaccctttac 36150278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 46941245 - 46941201
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||    
T  46941245 gagtgatgatacatgtaccaccccatgtggcaatacactctttac 46941201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 43901729 - 43901791
Alignment:
Q  68 tacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgta 130  Q
    ||||||| |||||||||| | |||||||||||||||||| ||| |||| |||||||||||||||    
T  43901729 tacctctctggttgctgccactgattatcaaagcacatagatgatttg-tttagttgagttgta 43901791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 45126835 - 45126880
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||| |||||||| ||||||  ||||||||||||||||||||||    
T  45126835 tgagtggtgatacatgtaccactccatgtggcaatacaccctttac 45126880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 53581765 - 53581810
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||| | |||||||  |||||||||||||||||||||    
T  53581765 tgagtgatgatacctgtaccaccctatgtggcaatacaccctttac 53581810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 25413873 - 25413829
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||| || |||||||||||||||    
T  25413873 gagtgatgatacatgtaccaccccatatgacaatacaccctttac 25413829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 40480941 - 40480897
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| || |||| |||| |||||||||||||||||    
T  40480941 gagtgatgatacatgtatcaccccatgcggcaatacaccctttac 40480897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 47190934 - 47190978
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| |||||   ||||||||||||||||||||||    
T  47190934 gagtgatgatacatgtaccattccatgtggcaatacaccctttac 47190978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 54246056 - 54246092
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaataca 242  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  54246056 gagtgatgatacatgtaccaccccatgtggcaataca 54246092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 19125006 - 19124824
Alignment:
Q  12 caaaggaaaagtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattatcaaagcacata-atgg 110  Q
    ||||| || ||||||||| || ||||||||||||||||||||| ||||| |||| |||||||| || ||  ||||||||||||||||||||||||  |||    
T  19125006 caaagaaagagtcttttagggtttcgtgtctttgttaagccttatgcttgattgaatacctctctgattcttgctattgattatcaaagcacatagttgg 19124907  T
Q  111 tttgttttagttgagttgtattggaccaaaaccatcgtttgagaaaagagtcttatta-ggttttgagtccttgattgtgagc 192  Q
    |||| ||||||||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  19124906 tttgatttagttgagttgtatttgatcaaaaccatcatttgagaaaagagtcttattagggttttgagtccttgattgtgagc 19124824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 17364062 - 17363886
Alignment:
Q  12 caaaggaaaagtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattatcaaag-cacataat-g 109  Q
    ||||| || ||||||||| || ||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||| |||||||  |||| | | |    
T  17364062 caaagaaatagtcttttagggtttcgtgtctttgt-aagctttgtgctttatagtatacctctctggttgctgctattgaatatcaaaatcacagagttg 17363964  T
Q  110 gtttgttttagttgagttgtattggaccaaaaccatcgtttgagaaaagagtcttattagg--ttttgagtccttgat 185  Q
    ||||| | |||| ||||||||||||| ||||||||| | || | |||||| | | ||||||  |||||||||||||||    
T  17363963 gtttgatgtagtcgagttgtattggatcaaaaccattgatttacaaaagaatataattagggtttttgagtccttgat 17363886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 45550565 - 45550478
Alignment:
Q  12 caaaggaaaagtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattatcaaa 99  Q
    ||||| || ||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||| | |||| | || ||||||||    
T  45550565 caaagaaagagtcttttagggtttcgtgtctttgttaagccttgtgctttattgtatatctctatggctactgccactgtttatcaaa 45550478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 16096941 - 16096896
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||    
T  16096941 tgagtgatgatacatgtaccacatcatgtggcaatacaccctttac 16096896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 4764634 - 4764678
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  4764634 gagtgatgatacatgtaccacctcatgtggcaatacaccttttac 4764678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 19047349 - 19047305
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  19047349 gagtgatgatacatgtaccaccccatgtggcaatacaccctttac 19047305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 43490309 - 43490353
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  43490309 gagtgatgctacatgtaccacctcatgtggcaatacaccctttac 43490353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 42849768 - 42849811
Alignment:
Q  207 agtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  42849768 agtgatgatacatgtaccaccccatgtggcaatacaccctttac 42849811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 30838824 - 30838780
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||    
T  30838824 gagtgatgatacatgtaccaccccatgtggcaatacaccttttac 30838780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 43335670 - 43335715
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| ||||||| |||||||||||| ||| |||||    
T  43335670 tgagtgatgatacatgtaccaccccatgtggcaatataccttttac 43335715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 21671508 - 21671676
Alignment:
Q  21 agtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattat-caaagcacata-atggtttgtttt 118  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||| | | ||||||||| |||||||||||  ||||||||| |    
T  21671508 agtcttttagggtttcgtatctttgttaagccttgtgctttattgtatacctctctggttgttacaattgattatacaaagcacatagttggtttgttgt 21671607  T
Q  119 agttgagttgtattggaccaaaaccatcgtttgagaaaagagtcttattagg--ttttgagtccttgat 185  Q
    ||||||||||||||||| |||||||||||||||| ||||||   ||||||||  |||||||||||||||    
T  21671608 agttgagttgtattggatcaaaaccatcgtttgataaaagacatttattagggtttttgagtccttgat 21671676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 21678924 - 21679092
Alignment:
Q  21 agtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattat-caaagcacata-atggtttgtttt 118  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||| | | ||||||||| |||||||||||  ||||||||| |    
T  21678924 agtcttttagggtttcgtatctttgttaagccttgtgctttattgtatacctctctggttgttacaattgattatacaaagcacatagttggtttgttgt 21679023  T
Q  119 agttgagttgtattggaccaaaaccatcgtttgagaaaagagtcttattagg--ttttgagtccttgat 185  Q
    ||||||||||||||||| |||||||||||||||| ||||||   ||||||||  |||||||||||||||    
T  21679024 agttgagttgtattggatcaaaaccatcgtttgataaaagacaattattagggtttttgagtccttgat 21679092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 26947824 - 26947967
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaa 139  Q
    ||||||||||||||||||||||  ||| |||||||||  ||||||   ||||||||||| |||||| ||||||| ||||||||||||||||||||| |||    
T  26947824 ttgttaagccttgtgctttattttgtacacctctttgcgtgctgccgctgattatcaaaacacatagatggtttattttagttgagttgtattggatcaa 26947923  T
Q  140 aaccatcgtttgagaaaagagtcttattaggttttgagtccttg 183  Q
    | ||||| ||  | |||||||||||| | || ||||||||||||    
T  26947924 agccatcattcaacaaaagagtcttagtgggctttgagtccttg 26947967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 3356688 - 3356806
Alignment:
Q  68 tacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaaaaccatcgtttgagaaaagagtcttat 166  Q
    ||||||| || ||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||||| |||| | |||| ||||| ||||||    
T  3356688 tacctctgtgattgctgctattgattatcaaagcacatagttggtttgatttagttgagttgtattggatcaaaatcatcttctgag-aaagaatcttat 3356786  T
Q  167 ta-ggttttgagtccttgat 185  Q
    || |||| ||||||||||||    
T  3356787 tagggttctgagtccttgat 3356806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 18386343 - 18386251
Alignment:
Q  43 ttgttaagccttgtgcttta--ttgtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtatt 132  Q
    ||||||||||||||||||||  ||||| |||||| ||  || ||| | |||||||||||||||||| || |||| ||||||||||||||||||    
T  18386343 ttgttaagccttgtgctttattttgtacacctctctgtgtgttgccaatgattatcaaagcacatagattgtttcttttagttgagttgtatt 18386251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 31136467 - 31136559
Alignment:
Q  43 ttgttaagccttgtgctttattgt--atacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtatt 132  Q
    |||||||| ||||| ||||||| |  |||||||||||  || ||| |||||||| ||||||||||| |||||||||||||||||| |||||||    
T  31136467 ttgttaaggcttgtactttattttttatacctctttgtgtgttgccattgattaccaaagcacatagatggtttgttttagttgaattgtatt 31136559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 9698241 - 9698285
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  9698241 gagtaatgatacatgtaccacctcatgtggcaatacaccctttac 9698285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 21293585 - 21293629
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||    
T  21293585 gagtggtgatacatgtaccacctcatgtggcaatacaccctttac 21293629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 30736176 - 30736130
Alignment:
Q  204 ttgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||||| ||||| | ||||||||||||||||||||||    
T  30736176 ttgagtgatgatacatgtaccatcccatgtggcaatacaccctttac 30736130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 7367738 - 7367697
Alignment:
Q  209 tgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  7367738 tgatgatacatgtaccaccccatgtggcaatacaccctttac 7367697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 3213592 - 3213548
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  3213592 gagtggtgatacatgtaccaccccatgtggcaatacaccctttac 3213548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 21280121 - 21280077
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||    
T  21280121 gagtgatgatacatgtaccaccccatgtggcaatataccctttac 21280077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 7292942 - 7292895
Alignment:
Q  203 attgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||| | |||||||| ||||||| ||||||||||||||||||||||    
T  7292942 attgagcggtgatacatgtaccaccccatgtggcaatacaccctttac 7292895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 24203892 - 24203939
Alignment:
Q  203 attgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||||| ||||||  |||||| |||||||||||||||    
T  24203892 attgagtgatgatacatgtaccactccatgtgacaatacaccctttac 24203939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 30014534 - 30014491
Alignment:
Q  207 agtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||| || |||| ||||||||||||||||||||||    
T  30014534 agtgatgatacatgtatcaccccatgtggcaatacaccctttac 30014491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 26669923 - 26669961
Alignment:
Q  212 tgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  26669923 tgatatatgtaccacctcatgtggcaatacaccctttac 26669961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 28624003 - 28623957
Alignment:
Q  116 tttagttgagttgtattggaccaaaaccatcgtttgagaaaagagtc 162  Q
    ||||||||||||||| |||| ||||||||||| |||| |||||||||    
T  28624003 tttagttgagttgtaatggatcaaaaccatcgattgataaaagagtc 28623957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 26466991 - 26466947
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| |||||||  ||||||||||||||| |||||    
T  26466991 gagtgatgatacatttaccaccctatgtggcaatacaccttttac 26466947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 12484765 - 12484621
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaa 139  Q
    ||||||||||||||||||||||  |||||||| | | | |  ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  12484765 ttgttaagccttgtgctttattttgtatacctttctaggtcatgccattgattatcaaagcacatagatggtttgttttagttgagttgtattggatcaa 12484666  T
Q  140 aaccatcgtttgagaaaagagtcttatta-ggttttgagtccttg 183  Q
    | || || ||| | ||||||||||||||| |||||||||||||||    
T  12484665 agccgtcatttaacaaaagagtcttattagggttttgagtccttg 12484621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 12506196 - 12506052
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaa 139  Q
    ||||||||||||||||||||||  |||||||| | | | |  ||| |||||||||||||||||| | ||||||||||||| ||||| ||||||||| |||    
T  12506196 ttgttaagccttgtgctttattttgtatacctttctaggtcatgccattgattatcaaagcacaaagatggtttgttttaattgagatgtattggatcaa 12506097  T
Q  140 aaccatcgtttgagaaaagagtcttatta-ggttttgagtccttg 183  Q
    | ||||| ||| | ||||||||||||||| |||||||||||||||    
T  12506096 agccatcatttaacaaaagagtcttattagggttttgagtccttg 12506052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 12657379 - 12657240
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaa 139  Q
    ||||||||||| ||||||||||  |||||||||| | | | |||| |||||||||||||||||| | |||||||||||||||| |||||||||| | |||    
T  12657379 ttgttaagcctagtgctttattttgtatacctctctaggtcctgccattgattatcaaagcacaaagatggtttgttttagttaagttgtattgcatcaa 12657280  T
Q  140 aaccatcgtttgagaaaagagtcttattag-gttttgagtc 179  Q
    | || || ||| |  ||||||||||||||| ||||||||||    
T  12657279 agccgtcattt-aacaaagagtcttattagcgttttgagtc 12657240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 42538336 - 42538383
Alignment:
Q  203 attgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  42538336 attgagtaatgatacatgtaccacctcatgtggcaatacaccctttac 42538383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 43343531 - 43343576
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||    
T  43343531 tgagtgatgatacatgtaccacctcatgtggcaatacaccttttac 43343576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 5810832 - 5810876
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  5810832 gagtgatgatacatgtaccaccccatgtggcaatacaccctttac 5810876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 24000920 - 24000964
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  24000920 gagtaatgatacatgtaccacctcatgtggcaatacaccctttac 24000964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 44416842 - 44416886
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  44416842 gagtgatgatacatgtaccacctcatgtggcaatacaccttttac 44416886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 32029724 - 32029769
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  32029724 tgagtcatgatacatgtaccaccccatgtggcaatacaccctttac 32029769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 16180265 - 16180309
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||    
T  16180265 gagtgatgatacatgtaccaccccatgtggcaatacaccttttac 16180309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 38160470 - 38160509
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccc 245  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  38160470 gagtgatgatacatgtaccatctcatgtggcaatacaccc 38160509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 27393171 - 27393212
Alignment:
Q  209 tgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  27393171 tgatgatacatgtaccaccccatgtggcaatacatcctttac 27393212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 41861868 - 41861824
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||  ||||||||||||||||||||||    
T  41861868 gagtggtgatacatgtaccactccatgtggcaatacaccctttac 41861824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 44326370 - 44326326
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||  ||||||||||||||||||||||    
T  44326370 gagtggtgatacatgtaccacaccatgtggcaatacaccctttac 44326326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 16208181 - 16208370
Alignment:
Q  12 caaaggaaaagtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattatc-aaagcacata-atg 109  Q
    ||||| || ||||||||| || ||||||||||||| | ||||||||||||||||||||||||| |  || |||||||||| |||| |||||||| |  ||    
T  16208181 caaagaaatagtcttttagggcttcgtgtctttgt-aggccttgtgctttattgtatacctctctatttactgctattgaatatcaaaagcacagagttg 16208279  T
Q  110 gtttgttttagttgagttgtattggaccaaaaccatcgtttgagaaaagagtcttattagg--ttttgagtccttgattgtgagcctctctt 199  Q
    ||||| | |||| ||||||||||| | ||||| ||||| |||| |||||| | ||||||||  |||||||||||||| |||||||| |||||    
T  16208280 gtttgatgtagtcgagttgtattgtatcaaaatcatcgcttgacaaaagaatattattagggtttttgagtccttga-tgtgagccgctctt 16208370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 19706597 - 19706690
Alignment:
Q  13 aaaggaaaagtcttttaagggttcgtgtctttgttaagccttgtgctttattgtatacctctttggttgctgctattgattatcaaagcacata 106  Q
    ||||||| ||||||||| || ||| ||| ||||||||||||||||||||||||||| ||||  |||||| | ||||||||||| ||||||||||    
T  19706597 aaaggaagagtcttttagggtttcatgtttttgttaagccttgtgctttattgtatgcctcaatggttgttcctattgattattaaagcacata 19706690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 19708007 - 19708103
Alignment:
Q  108 tggtttgttttagttgagttgtattggaccaaaaccatcgtttgagaaaagagtcttatta-ggttttgagtccttgattgtgagcctctctttgtat 204  Q
    ||||| ||||||||||||||||||| |  ||||||||| ||||||||||| |||||||||| |||||||||| ||||| ||||||||||| |||||||    
T  19708007 tggttggttttagttgagttgtattaggtcaaaaccattgtttgagaaaatagtcttattagggttttgagtacttga-tgtgagcctctatttgtat 19708103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 11582958 - 11582914
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  11582958 gagtaatgatacatgtaccacctcatgtggcaatacaccctttac 11582914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 42197344 - 42197387
Alignment:
Q  207 agtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  42197344 agtgatgatacatgtaccaccccatgtggcaatacaccctttac 42197387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 2547190 - 2547144
Alignment:
Q  204 ttgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||    
T  2547190 ttgagtgatgatacatgtaccaccctatgtggcaatacaccctttac 2547144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 3743967 - 3743919
Alignment:
Q  202 tattgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| || ||||||| ||||| ||||||||||||||||    
T  3743967 tattgagtgatgatatatgtaccaccccatgtagcaatacaccctttac 3743919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 30912470 - 30912514
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||    
T  30912470 gagtgatgatacatgtaccaccccatgtggcaatacactctttac 30912514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 36743391 - 36743435
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||    
T  36743391 gagtgatgatacatgtaccaccccatgtggcaatacaccatttac 36743435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 9241745 - 9241702
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacacccttt 248  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||    
T  9241745 tgagtgatgatacatgtaccaccccatgtggcaacacacccttt 9241702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 29705549 - 29705510
Alignment:
Q  211 atgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  29705549 atgatacatgtaccaccccatgtggcaatacaccctttac 29705510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 29800864 - 29800902
Alignment:
Q  212 tgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  29800864 tgatacatgtaccaccccatgtggcaatacaccctttac 29800902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 31384857 - 31384812
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||| || ||||||| |||||||||||| |||||||||    
T  31384857 tgagtgatgatatatgtaccaccccatgtggcaatataccctttac 31384812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 20148952 - 20148908
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||  ||||||||||||||||||||||    
T  20148952 gagtggtgatacatgtaccacaccatgtggcaatacaccctttac 20148908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 45397507 - 45397464
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||    
T  45397507 gagtgatgatacatgtaccacc-catgtggcaacacaccctttac 45397464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 14093 - 14141
Alignment:
Q  202 tattgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  14093 tattgagtgatgatacatgtaccaccccatgtggcaatacaccctttac 14141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 24421 - 24469
Alignment:
Q  202 tattgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  24421 tattgagtgatgatacatgtaccaccccatgtggcaatacaccctttac 24469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 27371 - 27539
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaa 139  Q
    ||||||||||| ||||||||||  ||| |||||| ||| || ||| | ||||||||||||||||||  ||||||| |||||| |||||||| |||| |||    
T  27371 ttgttaagcctcgtgctttattttgtacacctctctgggtgttgcaactgattatcaaagcacataggtggtttg-tttagtagagttgtaatggatcaa 27469  T
Q  140 aaccatcgtttgagaaaagagtcttatta-ggttttgagtccttg---attgtgagcctctctttgtatt 205  Q
    |  | || ||| |||||| ||| |||||| |||||||||||||||    |||| ||||||||||||||||    
T  27470 agtcgtcatttaagaaaatagttttattagggttttgagtccttgttatttgtaagcctctctttgtatt 27539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 205
Target Start/End: Complemental strand, 12493106 - 12492938
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaa 139  Q
    ||||||||||| ||||||||||  ||| |||||| ||| || ||| | ||||||||||||||||||  ||||||| |||||| |||||||| |||| |||    
T  12493106 ttgttaagcctcgtgctttattttgtacacctctctgggtgttgcaactgattatcaaagcacataggtggtttg-tttagtagagttgtaatggatcaa 12493008  T
Q  140 aaccatcgtttgagaaaagagtcttatta-ggttttgagtccttg---attgtgagcctctctttgtatt 205  Q
    |  | || ||| |||||| ||| |||||| |||||||||||||||    |||| ||||||||||||||||    
T  12493007 agtcgtcatttaagaaaatagttttattagggttttgagtccttgttatttgtaagcctctctttgtatt 12492938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 39668106 - 39668249
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtattggaccaa 139  Q
    |||||||| |||||||||||||  |||||||| | ||| || | | | || ||||||||||||| | ||||| ||| ||||||||||||||||||| |||    
T  39668106 ttgttaagtcttgtgctttattttgtatacctatctggatgttaccactgtttatcaaagcacagagatggtatgtgttagttgagttgtattggatcaa 39668205  T
Q  140 aaccatcgtttgagaaaagagtcttattagg-ttttgagtcctt 182  Q
    | || || ||| | ||||||||||||||||| |||||| |||||    
T  39668206 agccgtcatttaacaaaagagtcttattaggattttgattcctt 39668249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 1771174 - 1771218
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  1771174 gagtgatgatacatgtaccaccccatgtggcaatacaccctttac 1771218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 27550501 - 27550457
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  27550501 gagtgatgatacatgtaccaccccatgtggcaatacaccctttac 27550457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 33703335 - 33703289
Alignment:
Q  204 ttgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  33703335 ttgagtgatgatacatgtaccaccccatatggcaatacaccctttac 33703289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 43514593 - 43514638
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  43514593 tgagtgatgatacatgtaccaccccatgtggcaatacactctttac 43514638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 27864756 - 27864712
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  27864756 gagtggtgatacatgtaccaccccatgtggcaatacaccctttac 27864712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 27893750 - 27893794
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  27893750 gagtggtgatacatgtaccaccccatgtggcaatacaccctttac 27893794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 28982730 - 28982774
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||    
T  28982730 gagtgatgatacatgtaccaccccatgtggcaatacaccttttac 28982774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 43735934 - 43735890
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| || |||||||||||||||||||    
T  43735934 gagtgatgatacatgtaccaccccacgtggcaatacaccctttac 43735890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 6095549 - 6095641
Alignment:
Q  43 ttgttaagccttgtgctttatt--gtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtatt 132  Q
    ||||||||| ||||| ||||||  |||||||||  ||  |||||| | ||||||||||| |||| | || |||||||||||||||||||||||    
T  6095549 ttgttaagctttgtgttttattttgtatacctcaatgtgtgctgccactgattatcaaaccacaaagattgtttgttttagttgagttgtatt 6095641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 35017925 - 35017888
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaataca 242  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  35017925 tgagtgatgatacatgtaccaccccatgtggcaataca 35017888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 23036172 - 23036128
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| |||||||||| ||| |||||||    
T  23036172 gagtgatgatacatgtaccaccccatgtggcaacacatcctttac 23036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 55966254 - 55966298
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||  ||||||||||||||||||||||    
T  55966254 gagtggtgatacatgtaccactccatgtggcaatacaccctttac 55966298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 5489970 - 5489924
Alignment:
Q  204 ttgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  5489970 ttgagtgatgatacatgtaccaccccatgtggcaatacaccctttac 5489924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 48498869 - 48498914
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  48498869 tgagtgatgatacatgtaccaccccatgtggcaatacaccctttac 48498914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 50448168 - 50448212
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  50448168 gagtgatgatacatgtaccaccccatgtggcaatacaccctttac 50448212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 43570993 - 43571038
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||| || ||||||| ||||||||||||||||||||||    
T  43570993 tgagtgatgatatatgtaccaccccatgtggcaatacaccctttac 43571038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 750213 - 750257
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||    
T  750213 gagtgatgatacatgtaccatcccatgtggcaatacaccctttac 750257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 4401520 - 4401476
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| |||||||  |||||||||||||||||||||    
T  4401520 gagtgatgatacatgtaccaccctatgtggcaatacaccctttac 4401476  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 24769407 - 24769451
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||    
T  24769407 gagtgatgatacatgtaccaccccatgtggcaatacactctttac 24769451  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 37814969 - 37814926
Alignment:
Q  207 agtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||| |||||||| ||||||| ||||||||||||||||||||||    
T  37814969 agtggtgatacatgtaccaccccatgtggcaatacaccctttac 37814926  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 7448017 - 7447973
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| |||||   ||||||||||||||||||||||    
T  7448017 gagtgatgatacatgtaccattccatgtggcaatacaccctttac 7447973  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 19664088 - 19663956
Alignment:
Q  57 gctttattgtatacctctttggttgctgctattgattatcaaag-cacataat-ggtttgttttagttgagttgtattggaccaaaaccatcgtttgaga 154  Q
    |||||||||||||||||| | |||||||||||||| |||||||  |||| | | |||||| | |||| ||||| ||||||| ||||||||||| || | |    
T  19664088 gctttattgtatacctctcttgttgctgctattgaatatcaaaatcacagagttggtttgatgtagtcgagttttattggatcaaaaccatcgctttaca 19663989  T
Q  155 aaagagtcttattagg--ttttgagtccttgat 185  Q
    ||||| | ||||||||  |||||| ||||||||    
T  19663988 aaagaatattattagggtttttgaatccttgat 19663956  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 2614557 - 2614601
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  2614557 gagtaatgatacatgtaccacctcatgtggcaatacaccctttac 2614601  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 25914904 - 25914948
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  25914904 gagtgatgatacatgtaccacctcatgtggcaatacaccatttac 25914948  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 41334563 - 41334615
Alignment:
Q  198 tttgtattgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||| |||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  41334563 tttggattgagtggtgatacatgtaccaccccatgtggcaatacaccctttac 41334615  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 18034175 - 18034130
Alignment:
Q  205 tgagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  18034175 tgagtgatgatacatgtaccaccccatatggcaatacaccctttac 18034130  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 5257187 - 5257143
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  5257187 gagtggtgatacatgtaccaccccatgtggcaatacaccctttac 5257143  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 24395007 - 24394910
Alignment:
Q  37 gtgtctttgttaagccttgtgcttta--ttgtatacctctttggttgctgctattgattatcaaagcacata-atggtttgttttagttgagttgtatt 132  Q
    |||||||||||||||||| |||||||  ||| |||||||| ||  || ||| |||||||||||||||||| | ||| |||| |||||||||||| ||||    
T  24395007 gtgtctttgttaagccttatgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttg-tttagttgagttttatt 24394910  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 38470765 - 38470727
Alignment:
Q  212 tgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  38470765 tgatacatgtaccacctcatatggcaatacaccctttac 38470727  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 7617325 - 7617281
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| || |||| |||||||||||||||| |||||    
T  7617325 gagtgatgatacatgtatcaccccatgtggcaatacaccttttac 7617281  T

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Target: scaffold0038 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 112847 - 112803
Alignment:
Q  206 gagtgatgatacatataccacctcatgtggcaatacaccctttac 250  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  112847 gagtgatgatacatgtaccaccccatgtggcaatacaccctttac 112803  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 871 - 833
Alignment:
Q  212 tgatacatataccacctcatgtggcaatacaccctttac 250  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  871 tgatatatgtaccacctcatgtggcaatacaccctttac 833  T

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